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NC_030949.1__YP_009277240.1__phiCTC2A_33__00033
Bact-VirNC_030949.1__YP_009277240.1__phiCTC2A_33__00033
Identity
- Accession:
- NC_030949 ↗
- Kingdom:
- phage
Quality
69.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-59
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.77 | 58.0 | 6.09e-01 | 98.3% | 94.1% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.76 | 65.0 | 6.16e-01 | 96.6% | 83.1% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 61.0 | 5.17e-01 | 100.0% | 62.1% |
| 2ibdA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 39.0 | 4.43e-01 | 71.2% | 100.0% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 42.0 | 4.01e-01 | 89.8% | 90.1% |
ECOD (1)
D2
high
residues 98-150
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27542.1 best | ArfC | 29.9 | 6.30e-07 | 98.1% | 59.7% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vfrA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.65 | 50.0 | 3.81e-01 | 84.9% | 74.6% |
| 3fgtA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.64 | 39.0 | 3.89e-01 | 83.0% | 58.2% |
| 2i1sA00 | 3.10.290.30 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › MM3350-like | 0.60 | 47.0 | 3.40e-01 | 92.5% | 36.5% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.57 | 35.0 | 3.78e-01 | 84.9% | 76.2% |
| 5lznA00 | 3.10.20.360 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain | 0.56 | 37.0 | 3.03e-01 | 84.9% | 33.3% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.55 | 42.0 | 4.42e-01 | 84.9% | 100.0% |
| 2e1qC01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.54 | 43.0 | 3.68e-01 | 92.5% | 70.7% |
| 4q7qB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.52 | 38.0 | 2.57e-01 | 84.9% | 84.0% |
| 4bwcA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.52 | 39.0 | 3.95e-01 | 92.5% | 81.1% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 44.0 | 3.95e-01 | 98.1% | 85.5% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.51 | 39.0 | 3.53e-01 | 84.9% | 67.1% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.51 | 35.0 | 2.60e-01 | 75.5% | 67.7% |
| 2kcrA00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.51 | 32.0 | 3.14e-01 | 83.0% | 54.1% |
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 31.0 | 2.98e-01 | 86.8% | 47.6% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4982792 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.61 | 46.0 | 3.27e-01 | 81.1% | 35.6% |
| 4938218 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 45.0 | 4.65e-01 | 79.2% | 96.0% |
| 4305218 | 375.6.1.1 ↗ | few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › FlhC | 0.60 | 32.0 | 3.75e-01 | 73.6% | 68.6% |
| 4028388 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.60 | 37.0 | 2.35e-01 | 90.6% | 11.4% |
| 4030365 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.59 | 47.0 | 3.75e-01 | 86.8% | 63.8% |
| 4969234 | 221.6.1.1 ↗ | a+b two layers › beta-Grasp › MM3350-like › MM3350-like › PRiA4_ORF3 | 0.59 | 46.0 | 3.26e-01 | 92.5% | 36.8% |
| 3699775 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 47.0 | 3.48e-01 | 88.7% | 60.0% |
| 3610526 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.58 | 36.0 | 2.35e-01 | 88.7% | 14.0% |
| 5079407 | 7533.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK | 0.57 | 48.0 | 3.24e-01 | 100.0% | 51.1% |
| 3271023 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.57 | 38.0 | 2.76e-01 | 71.7% | 96.5% |
| 3562933 | 198.1.1.4 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 | 0.56 | 42.0 | 3.10e-01 | 83.0% | 30.3% |
| 3711290 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.56 | 39.0 | 3.75e-01 | 73.6% | 76.7% |
| 5027909 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 38.0 | 3.68e-01 | 81.1% | 65.0% |
| 3995944 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 38.0 | 2.24e-01 | 77.4% | 77.3% |
| 3389022 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.54 | 44.0 | 4.50e-01 | 98.1% | 94.0% |
| 3960554 | 2007.1.19.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like | 0.54 | 43.0 | 3.15e-01 | 96.2% | 91.1% |
| 3739576 | 327.11.2.27 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin | 0.52 | 39.0 | 3.88e-01 | 88.7% | 78.2% |
| 3266378 | 5.1.4.239 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Dicty_CTDC | 0.51 | 33.0 | 3.55e-01 | 71.7% | 77.8% |
| 5005187 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.51 | 36.0 | 2.37e-01 | 77.4% | 63.7% |
| 3201098 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.51 | 35.0 | 2.13e-01 | 75.5% | 74.4% |
| 3521873 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.51 | 35.0 | 3.11e-01 | 83.0% | 48.8% |
| 3617645 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.50 | 37.0 | 2.03e-01 | 83.0% | 8.5% |