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NC_030949.1__YP_009277242.1__phiCTC2A_35__00035
Bact-VirNC_030949.1__YP_009277242.1__phiCTC2A_35__00035
Identity
- Accession:
- NC_030949 ↗
- Kingdom:
- phage
Quality
71.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-57
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v7fA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 49.0 | 3.52e-01 | 80.8% | 82.7% |
| 1rsgA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 44.0 | 2.87e-01 | 73.1% | 20.4% |
| 2zuvA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 49.0 | 2.96e-01 | 82.7% | 30.3% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.63 | 41.0 | 3.68e-01 | 80.8% | 49.3% |
| 2vx7A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 45.0 | 2.69e-01 | 76.9% | 37.9% |
| 3cdhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 45.0 | 3.30e-01 | 78.8% | 59.0% |
| 3hwcA01 | 1.10.3140.10 | Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 | 0.60 | 43.0 | 3.19e-01 | 76.9% | 65.3% |
| 4rz2B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 42.0 | 2.66e-01 | 73.1% | 20.7% |
| 4l8nA03 | 3.30.160.670 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 43.0 | 3.04e-01 | 76.9% | 82.3% |
| 4x0qA04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.60 | 46.0 | 3.32e-01 | 98.1% | 29.2% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 45.0 | 3.56e-01 | 80.8% | 86.4% |
| 2b9wA02 | 1.10.405.20 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.59 | 41.0 | 3.14e-01 | 73.1% | 58.5% |
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.59 | 46.0 | 4.22e-01 | 84.6% | 94.0% |
| 2kx7A00 | 3.40.50.11620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase RcsD, RcsD-ABL domain | 0.57 | 42.0 | 3.34e-01 | 80.8% | 87.4% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.57 | 39.0 | 2.72e-01 | 71.2% | 25.0% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.57 | 38.0 | 2.72e-01 | 100.0% | 21.0% |
| 4iq0C02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 42.0 | 2.84e-01 | 80.8% | 96.1% |
| 1f02T00 | 4.10.820.10 | Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain | 0.54 | 39.0 | 3.65e-01 | 76.9% | 75.8% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.54 | 42.0 | 3.28e-01 | 88.5% | 62.0% |
| 3g7sA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.53 | 45.0 | 2.68e-01 | 96.2% | 16.2% |
| 7r0kA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.53 | 46.0 | 3.26e-01 | 100.0% | 69.9% |
| 2i4lA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 47.0 | 2.85e-01 | 100.0% | 49.4% |
| 2wtvA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.52 | 41.0 | 2.97e-01 | 90.4% | 54.7% |
| 4id8A00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 3.30e-01 | 71.2% | 61.5% |
| 4krdB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 42.0 | 2.97e-01 | 100.0% | 53.2% |
| 4jaqA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 41.0 | 3.10e-01 | 98.1% | 37.9% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4933747 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.70 | 57.0 | 4.98e-01 | 96.2% | 64.7% |
| 4393385 | 1032.1.1.1 ↗ | alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › TcdA_TcdB_pore | 0.68 | 53.0 | 3.72e-01 | 88.5% | 31.1% |
| 5054779 | 2006.1.4.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN | 0.67 | 45.0 | 3.25e-01 | 84.6% | 26.3% |
| 3832703 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.62 | 52.0 | 2.96e-01 | 100.0% | 12.4% |
| 2101955 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.61 | 45.0 | 3.19e-01 | 80.8% | 44.0% |
| 3957541 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.61 | 43.0 | 3.16e-01 | 75.0% | 80.7% |
| 3697926 | 601.21.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › Evr1_Alr | 0.60 | 43.0 | 3.10e-01 | 76.9% | 25.3% |
| 5051539 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.60 | 45.0 | 3.50e-01 | 80.8% | 67.8% |
| 3251564 | 2002.1.1.234 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2+Meth_synt_1 | 0.59 | 48.0 | 2.83e-01 | 94.2% | 29.2% |
| 5005057 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.59 | 50.0 | 3.92e-01 | 96.2% | 91.3% |
| 3981211 | 3226.1.1.1 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease | 0.59 | 49.0 | 2.96e-01 | 100.0% | 69.6% |
| 3271984 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.58 | 44.0 | 3.22e-01 | 82.7% | 81.4% |
| 4230333 | 7579.1.1.23 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II | 0.58 | 43.0 | 2.64e-01 | 84.6% | 42.5% |
| 3979705 | 2484.1.1.248 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GpA_nuclease | 0.57 | 40.0 | 2.59e-01 | 75.0% | 41.2% |
| None | — | 0.57 | 49.0 | 3.88e-01 | 98.1% | 76.4% | |
| 3689101 | 7579.1.1.23 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II | 0.56 | 46.0 | 2.76e-01 | 90.4% | 56.7% |
| 3279061 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.56 | 39.0 | 3.63e-01 | 76.9% | 55.7% |
| 3788383 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.55 | 45.0 | 2.70e-01 | 92.3% | 89.4% |
| 4122063 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 45.0 | 3.55e-01 | 100.0% | 55.2% |
| 3788916 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.55 | 46.0 | 2.67e-01 | 94.2% | 44.0% |
| 4288608 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 46.0 | 2.80e-01 | 100.0% | 80.0% |
| 4929718 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 3.43e-01 | 92.3% | 94.3% |
| 4994375 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.53 | 44.0 | 2.57e-01 | 92.3% | 24.2% |
| 3164240 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.53 | 37.0 | 3.44e-01 | 76.9% | 58.6% |
| 5055185 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.53 | 36.0 | 3.48e-01 | 98.1% | 63.3% |
| 5071468 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 45.0 | 3.39e-01 | 96.2% | 88.0% |
| 3903618 | 219.1.1.54 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 | 0.52 | 46.0 | 2.87e-01 | 100.0% | 75.5% |
| 3582440 | 4.1.1.107 ↗ | beta barrels › SH3 › SH3 › SH3 › XRN1_D1 | 0.51 | 44.0 | 2.99e-01 | 94.2% | 45.4% |
| 3707907 | 320.4.1.3 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB | 0.51 | 42.0 | 3.38e-01 | 100.0% | 74.8% |
| 3225405 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.50 | 38.0 | 2.77e-01 | 80.8% | 75.0% |