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NC_030949.1__YP_009277271.1__phiCTC2A_64__00064

Bact-Vir

NC_030949.1__YP_009277271.1__phiCTC2A_64__00064

Identity

Accession:
NC_030949 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phiCTC2A

TaxID: 1567015

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-77
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pu6A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.67 44.0 3.72e-01 84.0% 41.5%
1w23A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 54.0 4.88e-01 100.0% 88.3%
1ze0A02 1.10.4070.10 Mainly Alpha › Orthogonal Bundle › putative redox-enzyme maturation protein fold › putative redox-enzyme maturation protein domain 0.57 42.0 4.19e-01 86.7% 76.9%
1cmzA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.56 41.0 4.08e-01 78.7% 82.5%
4q4hA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.12e-01 100.0% 29.1%
1tm9A00 1.10.3960.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein MG354 fold › MG354-like 0.51 40.0 3.25e-01 84.0% 79.6%
4pl0A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 3.06e-01 100.0% 29.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3925195 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.76 62.0 6.65e-01 97.3% 100.0%
3274841 196.1.1.1 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.62 48.0 3.95e-01 85.3% 77.1%
3219024 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.59 51.0 3.39e-01 100.0% 29.1%
4365992 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.59 53.0 4.74e-01 100.0% 86.7%
3621947 196.1.1.1 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.57 41.0 3.78e-01 76.0% 74.0%
3720326 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.57 45.0 2.79e-01 89.3% 14.0%
3280490 628.1.1.1 ↗ alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD 0.57 44.0 3.60e-01 84.0% 85.5%
3489262 196.1.1.1 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS 0.56 43.0 3.67e-01 85.3% 96.2%
3220413 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.56 42.0 3.44e-01 85.3% 40.6%
3607337 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 38.0 3.66e-01 90.7% 61.1%
3813017 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.52 36.0 3.36e-01 94.7% 56.8%
3961491 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.50 43.0 2.92e-01 100.0% 24.5%
D2 high residues 82-202
PDB
Domain cluster: rep: KC237729.1__AGH27918.1__phiCP51_0027__00027__D81-237
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tuoA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.68 37.0 4.77e-01 97.5% 96.9%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.68 52.0 5.45e-01 100.0% 88.9%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.67 52.0 4.96e-01 96.7% 69.5%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.66 45.0 5.13e-01 98.3% 92.2%
5cwaA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.61 54.0 3.57e-01 96.7% 48.9%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.61 53.0 3.55e-01 94.2% 53.1%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.57 52.0 5.16e-01 98.3% 98.4%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.56 40.0 3.75e-01 74.4% 73.3%
2l9pA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 46.0 4.23e-01 97.5% 90.2%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 28.0 3.03e-01 71.1% 59.6%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 47.0 4.17e-01 100.0% 92.5%
1pp0B00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.50 37.0 3.18e-01 76.9% 65.5%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075730 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.68 59.0 6.06e-01 97.5% 97.4%
4997345 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.66 62.0 6.12e-01 100.0% 98.4%
5036533 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.57 51.0 4.17e-01 100.0% 52.9%
5043905 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.57 51.0 4.19e-01 100.0% 54.2%
4030698 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.57 43.0 4.69e-01 98.3% 97.0%
3507674 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.55 39.0 2.60e-01 73.6% 98.8%
5005783 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 40.0 3.52e-01 76.0% 51.4%
3300968 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.51e-01 80.2% 31.4%
4955607 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.54 46.0 3.83e-01 95.0% 53.0%
3284034 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 37.0 3.10e-01 71.9% 91.0%
4996611 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.51 45.0 4.21e-01 98.3% 98.7%
4959666 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 44.0 4.09e-01 95.9% 95.5%
3827531 844.1.1.5 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.50 40.0 3.20e-01 86.0% 83.1%
3715923 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.50 36.0 2.53e-01 74.4% 79.8%
3768344 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.50 39.0 2.61e-01 84.3% 31.3%
D3 high residues 205-349
PDB
Domain cluster: rep: OR157981.1__WNL48887.1__X__00058__D197-313
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i6tA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.54 27.0 2.69e-01 97.9% 43.4%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 37.0 2.79e-01 72.4% 99.7%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.67e-01 84.1% 95.6%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.51 31.0 3.74e-01 95.2% 92.8%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944879 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 25.0 3.27e-01 86.9% 62.4%
3167354 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.56 27.0 3.66e-01 98.6% 90.4%
3995059 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.52 42.0 3.61e-01 84.1% 91.7%
3935550 210.1.2.8 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 0.52 40.0 3.28e-01 81.4% 98.9%
4304742 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.51 41.0 3.66e-01 84.1% 97.5%
3204677 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 38.0 3.59e-01 78.6% 90.3%
3398695 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.50 40.0 3.57e-01 84.1% 96.2%