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NC_030951.1__YP_009277345.1__phiCTC2B_04__00004
Bact-VirNC_030951.1__YP_009277345.1__phiCTC2B_04__00004
Identity
- Accession:
- NC_030951 ↗
- Kingdom:
- phage
Quality
89.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-56
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g4eA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.68 | 49.0 | 3.08e-01 | 76.4% | 37.0% |
| 3vgzC00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 43.0 | 2.72e-01 | 80.0% | 47.7% |
| 2qrdA00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.58 | 31.0 | 2.47e-01 | 85.5% | 23.7% |
| 2qe8A00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 41.0 | 2.59e-01 | 80.0% | 70.3% |
| 6oziB00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.57 | 43.0 | 2.91e-01 | 85.5% | 43.2% |
| 3cjlA00 | 3.10.20.850 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 | 0.56 | 36.0 | 3.18e-01 | 76.4% | 40.9% |
| 3loyA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 39.0 | 3.13e-01 | 74.5% | 42.1% |
| 1cruA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.56 | 41.0 | 2.46e-01 | 80.0% | 66.7% |
| 2nn6F00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.55 | 47.0 | 3.13e-01 | 96.4% | 38.6% |
| 2nn6B01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.55 | 45.0 | 2.99e-01 | 90.9% | 36.9% |
| 3pjvD02 | 6.20.270.20 | Special › Other non-globular › Carboxypeptidase Inhibitor; Chain A › LapD/MoxY periplasmic domain | 0.54 | 32.0 | 3.36e-01 | 100.0% | 62.0% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 45.0 | 3.27e-01 | 98.2% | 97.5% |
| 3v4rA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 43.0 | 2.79e-01 | 92.7% | 71.1% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.51 | 30.0 | 2.63e-01 | 80.0% | 33.3% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3475905 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.67 | 51.0 | 3.03e-01 | 83.6% | 91.3% |
| 3940192 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.63 | 40.0 | 3.51e-01 | 100.0% | 39.8% |
| 4978342 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 47.0 | 3.07e-01 | 87.3% | 45.6% |
| 3389720 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.59 | 51.0 | 3.08e-01 | 100.0% | 21.0% |
| 5056801 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.58 | 39.0 | 2.99e-01 | 94.5% | 30.4% |
| 4974446 | 210.1.1.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits | 0.58 | 42.0 | 2.75e-01 | 80.0% | 48.9% |
| 3916905 | 3567.1.1.28 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › COA8 | 0.57 | 48.0 | 3.50e-01 | 92.7% | 41.3% |
| 4190296 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.57 | 35.0 | 2.70e-01 | 90.9% | 27.5% |
| 3587058 | 605.1.1.10 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › SPOB_a | 0.56 | 45.0 | 4.13e-01 | 100.0% | 67.5% |
| 4883002 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.56 | 42.0 | 4.14e-01 | 81.8% | 91.8% |
| 4604112 | 213.1.1.8 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › HlyC | 0.56 | 39.0 | 2.96e-01 | 78.2% | 75.0% |
| 4993186 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.54 | 40.0 | 3.43e-01 | 85.5% | 49.5% |
| 3743243 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.54 | 47.0 | 4.10e-01 | 98.2% | 94.1% |
| 4994964 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.53 | 39.0 | 2.60e-01 | 83.6% | 90.9% |
| 3471734 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.51 | 44.0 | 3.90e-01 | 94.5% | 80.8% |
| 3361286 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.51 | 41.0 | 2.60e-01 | 100.0% | 50.0% |
| 3615475 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.50 | 37.0 | 2.82e-01 | 81.8% | 31.7% |