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NC_030951.1__YP_009277348.1__phiCTC2B_07__00007
Bact-VirNC_030951.1__YP_009277348.1__phiCTC2B_07__00007
Identity
- Accession:
- NC_030951 ↗
- Kingdom:
- phage
Quality
86.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-105
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fwdA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.72 | 51.0 | 5.17e-01 | 92.3% | 74.4% |
| 2z3xA00 | 6.10.10.80 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like | 0.69 | 47.0 | 5.29e-01 | 89.7% | 100.0% |
| 1r6bX03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 50.0 | 4.89e-01 | 97.4% | 75.0% |
| 3swhA01 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.65 | 46.0 | 3.54e-01 | 73.1% | 37.6% |
| 7s0rB01 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.63 | 52.0 | 5.30e-01 | 100.0% | 94.7% |
| 1onfA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.63 | 48.0 | 3.49e-01 | 80.8% | 45.6% |
| 6rxaA01 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.61 | 49.0 | 4.72e-01 | 93.6% | 77.0% |
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 51.0 | 4.70e-01 | 93.6% | 84.5% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 46.0 | 4.58e-01 | 92.3% | 77.1% |
| 3r1wA00 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.60 | 45.0 | 3.48e-01 | 80.8% | 91.7% |
| 2dlaA01 | 1.20.930.50 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.60 | 44.0 | 3.54e-01 | 79.5% | 41.2% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.60 | 45.0 | 4.71e-01 | 79.5% | 100.0% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 50.0 | 4.82e-01 | 94.9% | 81.8% |
| 3di2A00 | 1.20.1250.50 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 43.0 | 3.77e-01 | 98.7% | 53.0% |
| 1sg6A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.57 | 45.0 | 3.39e-01 | 85.9% | 62.4% |
| 8amqA02 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.57 | 42.0 | 2.70e-01 | 78.2% | 29.3% |
| 6cnzF00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.56 | 48.0 | 3.89e-01 | 97.4% | 53.8% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.56 | 49.0 | 3.97e-01 | 97.4% | 55.3% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.56 | 41.0 | 4.24e-01 | 75.6% | 97.3% |
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 39.0 | 3.44e-01 | 75.6% | 77.2% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.55 | 49.0 | 4.09e-01 | 100.0% | 69.4% |
| 1t3aA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.54 | 48.0 | 3.08e-01 | 100.0% | 46.5% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.54 | 39.0 | 4.00e-01 | 75.6% | 87.2% |
| 5cz2C00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 45.0 | 3.78e-01 | 100.0% | 86.8% |
| 1binA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 42.0 | 3.49e-01 | 85.9% | 87.4% |
| 2y0nC00 | 1.10.274.30 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › MRG domain | 0.54 | 46.0 | 3.62e-01 | 94.9% | 93.9% |
| 7y8uF01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.53 | 42.0 | 3.22e-01 | 87.2% | 68.1% |
| 4xvxA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 46.0 | 3.77e-01 | 97.4% | 65.3% |
| 2fefA01 | 1.20.1440.70 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › PA2201 N-terminal domain-like | 0.51 | 41.0 | 3.52e-01 | 87.2% | 67.2% |
| 3afhA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.51 | 32.0 | 3.76e-01 | 87.2% | 100.0% |
| 3m6jA01 | 1.20.1260.40 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.51 | 42.0 | 3.73e-01 | 97.4% | 63.2% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3734144 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.69 | 60.0 | 4.81e-01 | 98.7% | 81.9% |
| 4975876 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.68 | 54.0 | 3.46e-01 | 94.9% | 18.1% |
| 4116870 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.67 | 56.0 | 5.57e-01 | 91.0% | 91.3% |
| 3699903 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.65 | 59.0 | 5.40e-01 | 100.0% | 78.0% |
| 3790618 | 621.1.1.1 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GBP_C | 0.65 | 43.0 | 3.94e-01 | 75.6% | 51.4% |
| 4226337 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.64 | 44.0 | 4.42e-01 | 75.6% | 70.0% |
| 4618102 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.64 | 44.0 | 4.38e-01 | 75.6% | 70.0% |
| 4034211 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.63 | 57.0 | 4.86e-01 | 100.0% | 63.2% |
| 3455460 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.62 | 44.0 | 2.86e-01 | 74.4% | 34.5% |
| 3226769 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 47.0 | 4.95e-01 | 93.6% | 92.9% |
| 3353757 | 621.1.1.1 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GBP_C | 0.61 | 44.0 | 4.15e-01 | 75.6% | 64.2% |
| 3224304 | 4120.1.1.30 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › DUF842 | 0.61 | 48.0 | 4.73e-01 | 85.9% | 89.4% |
| 3786602 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.61 | 50.0 | 4.75e-01 | 97.4% | 74.7% |
| 3591437 | 601.29.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › TM1646-like › TM1646-like | 0.60 | 44.0 | 4.07e-01 | 92.3% | 60.0% |
| 5064497 | 2003.1.1.49 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Malic_M | 0.60 | 51.0 | 3.66e-01 | 98.7% | 34.5% |
| 4882405 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.60 | 47.0 | 4.35e-01 | 92.3% | 65.7% |
| 3299574 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 46.0 | 4.39e-01 | 88.5% | 69.5% |
| 3032802 | 152.1.1.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 | 0.59 | 42.0 | 4.62e-01 | 84.6% | 100.0% |
| 3828041 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.59 | 46.0 | 4.31e-01 | 88.5% | 67.0% |
| 3650978 | 108.1.1.27 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 | 0.58 | 46.0 | 4.28e-01 | 92.3% | 67.0% |
| 4144086 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.58 | 46.0 | 4.28e-01 | 89.7% | 68.0% |
| 3795499 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.58 | 39.0 | 3.39e-01 | 70.5% | 76.8% |
| 3592210 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.57 | 48.0 | 4.47e-01 | 93.6% | 92.0% |
| 3955184 | 3831.1.1.1 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI | 0.56 | 48.0 | 4.76e-01 | 100.0% | 89.4% |
| 3710397 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.56 | 48.0 | 4.17e-01 | 94.9% | 76.7% |
| 3227678 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.56 | 50.0 | 4.62e-01 | 100.0% | 90.0% |
| 4033044 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.56 | 45.0 | 4.63e-01 | 94.9% | 96.0% |
| 3687983 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.56 | 45.0 | 3.79e-01 | 92.3% | 50.7% |
| 4988250 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.55 | 47.0 | 3.12e-01 | 93.6% | 55.9% |
| 3960206 | 191.1.1.27 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_25 | 0.55 | 41.0 | 3.63e-01 | 79.5% | 58.3% |
| 2972075 | 3759.1.1.1 ↗ | alpha arrays › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antiterm | 0.54 | 40.0 | 4.18e-01 | 80.8% | 87.3% |
| 4974088 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.54 | 40.0 | 2.81e-01 | 79.5% | 43.8% |
| 3925206 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.54 | 46.0 | 3.83e-01 | 94.9% | 57.9% |
| 3904356 | 3755.3.1.9 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › SH3BP5 | 0.54 | 39.0 | 2.82e-01 | 75.6% | 90.2% |
| 2387775 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.54 | 46.0 | 3.84e-01 | 97.4% | 56.0% |
| 4140367 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.53 | 42.0 | 3.44e-01 | 87.2% | 45.3% |
| 5028679 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.53 | 47.0 | 4.31e-01 | 100.0% | 83.5% |
| 4446401 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.53 | 43.0 | 3.55e-01 | 91.0% | 55.2% |
| 5060007 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.52 | 45.0 | 3.81e-01 | 97.4% | 56.3% |
| 3618907 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.52 | 42.0 | 3.07e-01 | 91.0% | 64.9% |
| 5073702 | 633.29.1.13 ↗ | alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 › DUF2096_N | 0.51 | 46.0 | 4.24e-01 | 100.0% | 83.0% |
| 4978734 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.50 | 35.0 | 2.82e-01 | 74.4% | 46.5% |
| 4972754 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.50 | 42.0 | 3.30e-01 | 98.7% | 85.3% |