←Back to structures
NC_030951.1__YP_009277364.1__phiCTC2B_23__00023
Bact-VirNC_030951.1__YP_009277364.1__phiCTC2B_23__00023
Identity
- Accession:
- NC_030951 ↗
- Kingdom:
- phage
Quality
87.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-71
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gxwC00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.65 | 51.0 | 4.53e-01 | 88.1% | 89.0% |
| 3kksB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.63 | 44.0 | 3.44e-01 | 73.1% | 55.9% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 46.0 | 4.29e-01 | 86.6% | 100.0% |
| 3n6rA03 | 3.30.700.30 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.60 | 52.0 | 4.22e-01 | 100.0% | 82.7% |
| 6epkA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.60 | 45.0 | 4.44e-01 | 82.1% | 77.5% |
| 3ge2A00 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 50.0 | 4.65e-01 | 97.0% | 97.8% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.59 | 42.0 | 3.32e-01 | 76.1% | 73.3% |
| 4dm5A00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.58 | 40.0 | 3.71e-01 | 71.6% | 63.2% |
| 4qxaB00 | 2.30.29.230 | Mainly Beta › Roll › PH-domain like › | 0.58 | 44.0 | 3.53e-01 | 85.1% | 71.4% |
| 7t8tA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 45.0 | 3.73e-01 | 88.1% | 81.7% |
| 1smpI00 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 46.0 | 4.12e-01 | 91.0% | 95.0% |
| 2h6oA01 | 2.60.40.2800 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 51.0 | 3.94e-01 | 100.0% | 71.1% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.56 | 39.0 | 3.44e-01 | 74.6% | 73.5% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.55 | 42.0 | 4.05e-01 | 85.1% | 88.3% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.55 | 37.0 | 2.94e-01 | 70.1% | 76.2% |
| 4pq0A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 42.0 | 3.88e-01 | 88.1% | 82.8% |
| 7oo1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.54 | 38.0 | 3.68e-01 | 92.5% | 64.9% |
| 8p2aA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.54 | 41.0 | 3.86e-01 | 85.1% | 96.6% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.53 | 40.0 | 3.84e-01 | 82.1% | 97.5% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 36.0 | 2.88e-01 | 73.1% | 73.8% |
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.53 | 40.0 | 4.01e-01 | 83.6% | 100.0% |
| 2zzeA03 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.52 | 42.0 | 3.72e-01 | 98.5% | 60.2% |
| 3kf3A02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.51 | 45.0 | 3.36e-01 | 100.0% | 87.6% |
| 2cofA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.40e-01 | 85.1% | 77.6% |
| 1h10A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 37.0 | 3.23e-01 | 83.6% | 80.3% |
| 3fynA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 37.0 | 2.93e-01 | 100.0% | 35.5% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3890165 | 219.1.1.24 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N | 0.74 | 65.0 | 4.54e-01 | 100.0% | 42.8% |
| 3399870 | 219.1.1.24 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N | 0.73 | 64.0 | 4.43e-01 | 100.0% | 41.3% |
| 3408147 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.71 | 62.0 | 4.21e-01 | 100.0% | 36.4% |
| 3399872 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.68 | 61.0 | 4.33e-01 | 100.0% | 44.5% |
| 4589583 | 2008.1.1.191 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII | 0.67 | 58.0 | 4.38e-01 | 100.0% | 68.2% |
| 3976843 | 9.11.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC | 0.65 | 50.0 | 4.64e-01 | 85.1% | 88.8% |
| 3360341 | 219.1.1.14 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin | 0.65 | 56.0 | 4.02e-01 | 100.0% | 35.6% |
| 4518121 | 9.7.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh | 0.62 | 54.0 | 4.74e-01 | 98.5% | 98.0% |
| 3520852 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.61 | 52.0 | 4.07e-01 | 95.5% | 84.0% |
| 1124180 | 3794.1.1.1 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT | 0.61 | 51.0 | 4.12e-01 | 95.5% | 80.7% |
| 4492006 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.61 | 42.0 | 2.82e-01 | 73.1% | 42.2% |
| 3404988 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.60 | 52.0 | 4.21e-01 | 98.5% | 89.6% |
| 5030570 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.60 | 46.0 | 3.51e-01 | 85.1% | 78.2% |
| 3258825 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.60 | 46.0 | 2.90e-01 | 86.6% | 70.1% |
| 3101373 | 3794.1.1.1 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT | 0.59 | 51.0 | 4.11e-01 | 100.0% | 78.7% |
| 4963032 | 244.2.1.15 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › TSCPD | 0.59 | 45.0 | 3.87e-01 | 83.6% | 92.7% |
| 5033243 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.58 | 40.0 | 3.76e-01 | 71.6% | 78.8% |
| 4434185 | 3804.1.1.1 ↗ | alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › Cas13a_endoribonuclease | 0.58 | 39.0 | 3.02e-01 | 76.1% | 29.1% |
| 5023934 | 4160.1.1.3 ↗ | beta complex topology › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) › PF26233 | 0.57 | 49.0 | 3.60e-01 | 100.0% | 89.7% |
| 4029815 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 45.0 | 3.59e-01 | 85.1% | 79.2% |
| 3640436 | 220.1.1.96 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF3292 | 0.56 | 47.0 | 3.68e-01 | 98.5% | 83.7% |
| 4949140 | 1.1.7.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO | 0.56 | 40.0 | 3.72e-01 | 98.5% | 59.8% |
| 3820521 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.55 | 41.0 | 2.67e-01 | 80.6% | 17.4% |
| 4599356 | 2004.1.1.429 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 | 0.55 | 44.0 | 2.80e-01 | 88.1% | 79.7% |
| 3591493 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.54 | 42.0 | 3.31e-01 | 85.1% | 44.8% |
| 3173787 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 40.0 | 3.47e-01 | 88.1% | 81.7% |
| 3744032 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.52 | 45.0 | 3.60e-01 | 100.0% | 65.5% |
| 3226939 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 38.0 | 3.42e-01 | 80.6% | 81.0% |