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NC_030951.1__YP_009277391.1__phiCTC2B_50__00050

Bact-Vir

NC_030951.1__YP_009277391.1__phiCTC2B_50__00050

Identity

Accession:
NC_030951 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-70
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10844.14 best DUF2577 28.3 2.50e-06 64.7% 36.4%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wg5F02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 64.0 6.86e-01 85.3% 98.3%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.78 63.0 6.60e-01 89.7% 96.7%
4da2A01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 63.0 5.95e-01 89.7% 82.3%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 54.0 5.27e-01 89.7% 70.3%
2lssA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 61.0 6.05e-01 89.7% 100.0%
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 55.0 5.65e-01 83.8% 100.0%
1go3E01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 57.0 5.16e-01 88.2% 90.4%
2vqeL00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 58.0 4.72e-01 88.2% 61.3%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 59.0 5.85e-01 95.6% 95.9%
1jt8A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 55.0 4.85e-01 91.2% 65.7%
3k0yA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.67 53.0 5.45e-01 89.7% 100.0%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.67 60.0 5.59e-01 100.0% 94.0%
1k3rA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 49.0 5.21e-01 89.7% 94.9%
3nqiA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.65 51.0 5.25e-01 89.7% 98.5%
3f8tA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 52.0 4.96e-01 91.2% 97.5%
2id0A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 52.0 5.01e-01 92.6% 83.3%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 52.0 4.52e-01 91.2% 70.8%
1kl9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 48.0 4.72e-01 88.2% 85.3%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.57 41.0 3.71e-01 88.2% 56.5%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 39.0 2.53e-01 72.1% 29.1%
3mxnA01 2.40.50.510 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 49.0 4.73e-01 100.0% 100.0%
1byfA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.56 47.0 3.94e-01 95.6% 85.4%
3rtxA01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.55 45.0 3.43e-01 91.2% 43.0%
2x5rA01 3.30.470.40 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.55 45.0 3.86e-01 95.6% 73.0%
1z2nX02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 40.0 3.60e-01 91.2% 69.7%
3tqhA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.52 39.0 2.90e-01 82.4% 47.8%
4zovB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 35.0 2.32e-01 73.5% 28.4%
7jptA01 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 43.0 3.66e-01 100.0% 56.1%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 36.0 2.31e-01 75.0% 29.1%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4606649 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.90 75.0 7.55e-01 88.2% 100.0%
5003400 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 63.0 5.36e-01 89.7% 55.2%
4032024 2.1.1.335 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29902 0.78 64.0 5.64e-01 86.8% 90.5%
3980538 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.78 62.0 5.98e-01 85.3% 93.3%
4353586 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 64.0 5.60e-01 89.7% 64.0%
4567567 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.77 62.0 5.20e-01 89.7% 53.7%
4287946 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 63.0 5.79e-01 88.2% 74.1%
4669771 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 63.0 5.99e-01 89.7% 80.0%
4114715 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 63.0 5.41e-01 89.7% 62.9%
2759388 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 63.0 6.22e-01 89.7% 93.0%
4250117 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.75 63.0 5.93e-01 89.7% 81.2%
3563077 2.1.1.188 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 0.75 61.0 5.72e-01 89.7% 92.9%
4920636 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.75 61.0 5.88e-01 89.7% 77.9%
4002805 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 62.0 6.14e-01 89.7% 92.9%
4656043 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.74 62.0 5.86e-01 89.7% 81.2%
4058131 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.74 61.0 5.81e-01 89.7% 83.7%
5075031 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.74 61.0 5.82e-01 89.7% 82.5%
4991760 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.73 61.0 5.62e-01 89.7% 76.5%
3997789 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 60.0 6.02e-01 92.6% 97.1%
5030021 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 58.0 5.78e-01 88.2% 91.4%
3593974 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 59.0 4.55e-01 91.2% 71.3%
3701347 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 63.0 4.00e-01 100.0% 74.7%
4583050 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 60.0 5.97e-01 95.6% 91.4%
None 0.70 62.0 3.84e-01 98.5% 77.9%
3719891 2.1.1.28 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.70 58.0 4.86e-01 91.2% 71.3%
3621335 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 59.0 5.47e-01 94.1% 84.7%
3998577 2.1.1.253 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29478 0.69 54.0 5.50e-01 83.8% 98.5%
3583375 2.1.1.259 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29495 0.69 57.0 4.98e-01 92.6% 75.2%
5026606 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 56.0 5.63e-01 89.7% 87.1%
3840116 2.1.1.172 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNR_OB1_NT 0.69 56.0 4.86e-01 89.7% 60.0%
3593985 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 56.0 4.78e-01 89.7% 73.6%
5004633 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 56.0 5.14e-01 89.7% 72.2%
3376913 2.1.1.28 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.68 56.0 4.78e-01 89.7% 60.9%
4970996 2.1.1.21 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 0.68 55.0 5.21e-01 89.7% 75.0%
3310146 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.67 60.0 3.76e-01 100.0% 71.8%
3238804 2.1.1.259 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29495 0.67 54.0 4.98e-01 89.7% 67.8%
3540522 2.1.1.248 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29087 0.67 53.0 5.22e-01 88.2% 82.7%
4182798 2.1.1.88 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD2 0.67 53.0 4.99e-01 88.2% 74.1%
177953 2.1.1.68 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_C 0.67 58.0 4.56e-01 100.0% 89.4%
3771117 2.1.1.237 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30958 0.66 54.0 5.38e-01 89.7% 91.4%
3932275 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 54.0 4.85e-01 91.2% 74.7%
175113 2.1.1.28 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.66 54.0 4.22e-01 89.7% 68.5%
3874008 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 52.0 5.15e-01 86.8% 94.3%
3578390 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 56.0 4.04e-01 94.1% 44.2%
3522221 2.1.1.237 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30958 0.66 53.0 5.38e-01 89.7% 96.9%
4095696 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.65 53.0 5.20e-01 89.7% 90.4%
3711601 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.65 41.0 3.03e-01 91.2% 25.3%
3863681 2.1.1.237 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30958 0.65 55.0 5.61e-01 94.1% 100.0%
3622421 2.1.1.217 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_3rd 0.65 53.0 5.25e-01 89.7% 90.0%
3995470 2.1.1.217 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_3rd 0.65 53.0 5.27e-01 89.7% 90.0%
4030001 5.1.4.621 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Mcl1_mid 0.63 39.0 2.21e-01 95.6% 6.1%
3508700 2.1.1.224 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.63 51.0 4.30e-01 91.2% 66.7%
3235891 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 51.0 4.98e-01 89.7% 88.0%
3604519 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 52.0 4.34e-01 92.6% 79.2%
4025163 2.1.1.224 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.62 50.0 4.14e-01 91.2% 52.3%
4220188 2.1.1.224 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.62 51.0 4.24e-01 92.6% 66.4%
3801549 2.1.1.224 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.62 49.0 4.25e-01 91.2% 71.3%
4083834 2.1.1.224 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.62 49.0 4.15e-01 89.7% 55.0%
4038328 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.62 48.0 4.86e-01 86.8% 98.5%
5043255 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 50.0 4.79e-01 94.1% 90.0%
3411809 309.1.2.1 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD 0.56 43.0 3.28e-01 97.1% 33.1%
3704365 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.56 44.0 3.23e-01 91.2% 30.7%
3209497 206.1.3.18 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 0.55 44.0 2.91e-01 92.6% 23.6%
2581339 520.2.1.1 beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.54 39.0 3.55e-01 89.7% 56.4%
3900658 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.53 45.0 3.59e-01 100.0% 77.3%
3715176 5.1.3.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.52 36.0 2.38e-01 76.5% 43.6%
3902382 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 43.0 3.54e-01 100.0% 82.9%
3775570 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 42.0 3.47e-01 100.0% 48.6%