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NC_031001.1__YP_009277784.1__BI084_gp45__00045
Bact-VirNC_031001.1__YP_009277784.1__BI084_gp45__00045
Identity
- Accession:
- NC_031001 ↗
- Kingdom:
- phage
Quality
77.7
mean pLDDT
Taxonomy
TaxID: 1887654
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-83
Domain cluster:
rep: ON456347.1__UTN92970.1__SEA_FINKLE_56__00056__D100-160
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1usmA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.78 | 64.0 | 5.51e-01 | 100.0% | 58.4% |
| 1in0A01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.78 | 59.0 | 5.26e-01 | 98.0% | 58.6% |
| 2ebbA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.77 | 63.0 | 5.03e-01 | 100.0% | 46.9% |
| 3ldgA01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.75 | 53.0 | 3.56e-01 | 100.0% | 19.6% |
| 1dcoA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.70 | 58.0 | 4.66e-01 | 100.0% | 47.5% |
| 4e9jA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.69 | 61.0 | 5.52e-01 | 100.0% | 73.9% |
| 4lowA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.68 | 56.0 | 4.76e-01 | 100.0% | 54.8% |
| 4fqdA01 | 3.65.10.10 | Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain | 0.68 | 49.0 | 3.22e-01 | 100.0% | 18.1% |
| 3encA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.66 | 55.0 | 4.80e-01 | 100.0% | 60.8% |
| 7pliA03 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 53.0 | 4.81e-01 | 100.0% | 64.0% |
| 1x44A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 52.0 | 4.13e-01 | 100.0% | 43.7% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 55.0 | 4.70e-01 | 100.0% | 65.9% |
| 3bc9A01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 50.0 | 4.16e-01 | 100.0% | 49.5% |
| 2gjhA00 | 3.30.1070.20 | Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › | 0.62 | 49.0 | 4.81e-01 | 98.0% | 80.7% |
| 5dx9A01 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.61 | 51.0 | 4.59e-01 | 98.0% | 68.1% |
| 1d5aA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.61 | 50.0 | 3.60e-01 | 100.0% | 59.8% |
| 2cxiA03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.59 | 47.0 | 4.31e-01 | 100.0% | 65.7% |
| 1bqnA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 44.0 | 3.86e-01 | 100.0% | 48.9% |
| 2r15A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 46.0 | 3.72e-01 | 100.0% | 41.4% |
| 2qyxB01 | 3.30.70.1360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like | 0.59 | 47.0 | 3.84e-01 | 100.0% | 45.0% |
| 4hkqA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 48.0 | 3.55e-01 | 100.0% | 34.0% |
| 4aimA03 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 47.0 | 4.27e-01 | 100.0% | 66.2% |
| 2mobA00 | 3.90.56.10 | Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › Monooxygenase component MmoB/DmpM | 0.58 | 47.0 | 3.96e-01 | 100.0% | 51.1% |
| 2amyA02 | 3.30.1240.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain | 0.56 | 46.0 | 3.83e-01 | 100.0% | 96.1% |
| 3t66A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 45.0 | 3.00e-01 | 100.0% | 23.5% |
| 1ct9A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.55 | 43.0 | 3.03e-01 | 94.0% | 37.0% |
| 7sjlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 44.0 | 3.75e-01 | 100.0% | 52.2% |
| 2qziA00 | 3.40.1720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like | 0.54 | 44.0 | 3.73e-01 | 100.0% | 55.4% |
| 3lwsF02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 41.0 | 3.42e-01 | 100.0% | 44.2% |
| 3i3wA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.54 | 43.0 | 3.93e-01 | 100.0% | 79.2% |
| 5tkwA01 | 3.30.420.380 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.54 | 46.0 | 3.24e-01 | 100.0% | 33.5% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.53 | 44.0 | 3.94e-01 | 100.0% | 80.0% |
| 7ylzA01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 42.0 | 2.87e-01 | 94.0% | 21.6% |
| 1z6tA04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 3.72e-01 | 100.0% | 55.3% |
| 3gw2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 3.56e-01 | 100.0% | 49.5% |
| 3l09A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 47.0 | 3.92e-01 | 100.0% | 63.1% |
| 2jfkC01 | 3.30.70.3290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 45.0 | 3.73e-01 | 100.0% | 90.1% |
| 1r1uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 3.48e-01 | 100.0% | 50.5% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 43.0 | 3.40e-01 | 100.0% | 46.2% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.50 | 41.0 | 3.45e-01 | 96.0% | 51.1% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3561147 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.90 | 68.0 | 6.57e-01 | 98.0% | 72.7% |
| 5008353 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.89 | 66.0 | 4.84e-01 | 100.0% | 32.5% |
| 5070538 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.84 | 66.0 | 5.82e-01 | 100.0% | 60.0% |
| 5033418 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.84 | 65.0 | 5.81e-01 | 100.0% | 60.0% |
| 4971598 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.75 | 64.0 | 5.57e-01 | 100.0% | 62.7% |
| 5035279 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.75 | 63.0 | 5.25e-01 | 100.0% | 54.1% |
| 4940284 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.75 | 63.0 | 5.45e-01 | 100.0% | 61.3% |
| 5045251 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.74 | 65.0 | 5.47e-01 | 100.0% | 60.0% |
| 5027876 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.74 | 65.0 | 5.48e-01 | 100.0% | 60.0% |
| 4972531 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.73 | 62.0 | 5.33e-01 | 100.0% | 60.0% |
| 5041064 | 305.2.1.1 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a | 0.73 | 59.0 | 4.82e-01 | 100.0% | 48.4% |
| 4943788 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.72 | 62.0 | 5.31e-01 | 100.0% | 60.0% |
| 5066537 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.71 | 61.0 | 5.03e-01 | 100.0% | 53.3% |
| 4948386 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.71 | 61.0 | 5.19e-01 | 100.0% | 60.0% |
| 4343334 | 3715.1.1.1 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e | 0.71 | 62.0 | 4.97e-01 | 100.0% | 54.0% |
| 4940667 | 881.3.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Outer membrane-associated lipoprotein TP0453 › Outer membrane-associated lipoprotein TP0453 | 0.71 | 64.0 | 3.90e-01 | 100.0% | 20.3% |
| 4962898 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.70 | 60.0 | 4.97e-01 | 100.0% | 53.9% |
| 5042213 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.70 | 60.0 | 5.15e-01 | 100.0% | 60.0% |
| 4976196 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.70 | 60.0 | 5.14e-01 | 100.0% | 60.0% |
| 3592723 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.69 | 60.0 | 4.87e-01 | 100.0% | 57.9% |
| 4987052 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.69 | 56.0 | 5.00e-01 | 98.0% | 62.7% |
| 4928119 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.68 | 57.0 | 5.05e-01 | 100.0% | 64.0% |
| 5017294 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.68 | 55.0 | 4.86e-01 | 98.0% | 61.3% |
| 4977599 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.68 | 56.0 | 4.79e-01 | 100.0% | 57.1% |
| 4954520 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.67 | 56.0 | 4.85e-01 | 100.0% | 60.0% |
| 3985898 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.67 | 60.0 | 5.22e-01 | 100.0% | 69.3% |
| 5446 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.67 | 55.0 | 4.99e-01 | 100.0% | 68.1% |
| 5051545 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.67 | 56.0 | 4.87e-01 | 100.0% | 61.3% |
| 3683037 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.66 | 56.0 | 4.43e-01 | 100.0% | 60.0% |
| 5053596 | 873.1.1.12 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 | 0.66 | 57.0 | 4.25e-01 | 100.0% | 38.5% |
| 3972739 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.65 | 58.0 | 5.17e-01 | 100.0% | 71.4% |
| 5000786 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.64 | 53.0 | 4.60e-01 | 100.0% | 60.0% |
| 5054667 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.64 | 52.0 | 4.40e-01 | 100.0% | 53.3% |
| 3601652 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.62 | 50.0 | 4.04e-01 | 100.0% | 56.5% |
| 4888143 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.62 | 53.0 | 5.14e-01 | 100.0% | 89.3% |
| 4931425 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.62 | 49.0 | 4.06e-01 | 100.0% | 50.0% |
| 4022197 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 50.0 | 4.25e-01 | 100.0% | 54.4% |
| 4033553 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.60 | 51.0 | 4.12e-01 | 100.0% | 48.6% |
| 3943937 | 205.1.1.44 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_11 | 0.60 | 47.0 | 3.27e-01 | 90.0% | 76.7% |
| 4934750 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.60 | 49.0 | 3.95e-01 | 100.0% | 55.5% |
| 3397461 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.59 | 48.0 | 4.26e-01 | 100.0% | 59.5% |
| 1866057 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.59 | 48.0 | 3.98e-01 | 100.0% | 49.5% |
| 3589477 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.58 | 46.0 | 4.51e-01 | 92.0% | 100.0% |
| 3628751 | 331.18.1.0 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc | 0.57 | 46.0 | 3.23e-01 | 96.0% | 34.1% |
| 3641084 | 387.1.5.31 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › PF29352 | 0.57 | 45.0 | 4.53e-01 | 100.0% | 98.1% |
| 3659690 | 387.1.5.31 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › PF29352 | 0.57 | 45.0 | 4.54e-01 | 98.0% | 96.0% |
| 4988428 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.56 | 48.0 | 3.23e-01 | 100.0% | 95.6% |
| 4054258 | 2484.1.1.47 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL | 0.55 | 46.0 | 3.47e-01 | 100.0% | 39.3% |
| 2075912 | 3012.1.1.2 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PMM | 0.55 | 43.0 | 3.66e-01 | 100.0% | 97.0% |
| 5048568 | 4294.1.1.2 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p | 0.54 | 45.0 | 3.09e-01 | 98.0% | 53.2% |
| 4025210 | 304.34.1.0 ↗ | a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases | 0.51 | 42.0 | 3.11e-01 | 100.0% | 54.8% |