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NC_031007.1__YP_009278553.1__BIZ82_gp241__00241

Bact-Vir

NC_031007.1__YP_009278553.1__BIZ82_gp241__00241

Identity

Accession:
NC_031007 ↗
Kingdom:
phage

Quality

66.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Derbicusvirus› Erwinia_phage_vB_EamM_EarlPhillipIV

TaxID: 1883372

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-160
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4do8A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.65 30.0 4.25e-01 86.3% 93.9%
2l03A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.64 32.0 4.31e-01 86.3% 93.2%
2oikA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.60 35.0 3.66e-01 86.3% 60.4%
4fx5A01 2.60.40.3670 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 33.0 3.41e-01 87.7% 54.9%
5utkA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 30.0 3.81e-01 87.7% 88.0%
1yg9A01 2.60.40.1960 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 29.0 4.00e-01 78.8% 98.6%
4ndhB00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.55 38.0 3.61e-01 98.6% 58.4%
1xdpA02 3.30.1840.10 Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain 0.55 49.0 4.39e-01 96.6% 84.7%
2v94B00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 33.0 3.88e-01 97.9% 90.3%
2pgcC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 28.0 3.34e-01 100.0% 73.2%
2o8rB02 3.30.1840.10 Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain 0.54 46.0 4.56e-01 95.2% 87.1%
3gk6A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.54 43.0 4.26e-01 84.9% 92.2%
1l2mA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.53 30.0 3.26e-01 100.0% 65.3%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 28.0 3.28e-01 84.2% 71.4%
3alxC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 32.0 3.75e-01 86.3% 86.4%
1kvdB00 3.30.44.10 Alpha Beta › 2-Layer Sandwich › Smk Toxin, Beta chain › Smk Toxin, beta chain 0.52 23.0 3.03e-01 75.3% 75.3%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 41.0 3.71e-01 86.3% 96.7%
2govA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.51 41.0 3.92e-01 85.6% 98.8%
1d5yB03 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.51 41.0 3.94e-01 84.9% 89.9%
3lurA00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.51 40.0 3.97e-01 83.6% 94.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3243629 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 33.0 4.17e-01 72.6% 92.9%
3229001 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 34.0 4.15e-01 78.8% 90.0%
3510388 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 38.0 4.14e-01 87.0% 84.0%
3797670 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 33.0 3.91e-01 85.6% 91.6%
3534065 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.54 31.0 3.85e-01 84.9% 95.3%
3398695 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 33.0 2.93e-01 100.0% 42.3%
3395814 382.1.1.6 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.53 36.0 4.06e-01 87.7% 93.3%
3494762 886.1.1.0 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain 0.52 41.0 3.98e-01 85.6% 97.6%
3388799 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.52 32.0 3.01e-01 100.0% 47.6%
5056359 886.1.1.2 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.51 41.0 4.11e-01 84.9% 96.0%
4419520 11.1.4.68 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TcaA_3rd_4th 0.51 27.0 3.55e-01 89.0% 97.3%
3200366 11.1.1.236 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.51 33.0 3.55e-01 87.0% 76.0%
3176712 6109.1.1.1 ↗ a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › ChAPs 0.50 43.0 4.02e-01 91.8% 75.0%