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NC_031012.1__YP_009279469.1__BIZ89_gp302__00302

Bact-Vir

NC_031012.1__YP_009279469.1__BIZ89_gp302__00302

Identity

Accession:
NC_031012 ↗
Kingdom:
phage

Quality

64.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Wphvirus› Bacillus_phage_Kida

TaxID: 1873998

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-86
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 48.0 4.88e-01 91.8% 69.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 5.23e-01 100.0% 85.5%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 4.84e-01 97.3% 70.0%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 36.0 3.81e-01 76.7% 59.1%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.66 48.0 5.09e-01 90.4% 88.9%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.38e-01 100.0% 88.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.78e-01 86.3% 83.9%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.61 40.0 4.41e-01 83.6% 87.5%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 39.0 4.16e-01 83.6% 78.1%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.89e-01 80.8% 61.6%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.57 49.0 4.18e-01 100.0% 63.8%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 38.0 4.29e-01 84.9% 96.2%
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.57 48.0 3.28e-01 91.8% 46.7%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 3.36e-01 72.6% 69.8%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 49.0 4.03e-01 98.6% 84.6%
1winA01 3.30.479.30 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain 0.54 43.0 3.73e-01 87.7% 86.3%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.54 43.0 3.76e-01 89.0% 92.3%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.54 47.0 3.32e-01 100.0% 47.7%
7xlqD01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 36.0 3.11e-01 90.4% 40.3%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.53 42.0 3.65e-01 86.3% 54.9%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.53 39.0 2.91e-01 79.5% 32.1%
1pu4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.53 46.0 2.90e-01 100.0% 73.7%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 44.0 3.55e-01 94.5% 68.5%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.57e-01 84.9% 61.5%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.52 45.0 4.41e-01 95.9% 87.3%
2vq9A00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.52 40.0 3.47e-01 86.3% 58.5%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 38.0 4.06e-01 95.9% 90.6%
1ya5T01 2.20.160.10 Mainly Beta › Single Sheet › titin filament fold › titin domain like 0.52 36.0 3.51e-01 79.5% 64.3%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.52 45.0 2.83e-01 100.0% 69.8%
1ffyA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 38.0 2.49e-01 83.6% 44.6%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 37.0 3.88e-01 84.9% 89.1%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3788285 395.1.1.4 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 0.65 42.0 4.84e-01 76.7% 96.0%
3585474 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.07e-01 75.3% 65.7%
5035282 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.60 50.0 4.34e-01 98.6% 64.8%
3616159 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 3.78e-01 87.7% 96.8%
3210702 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.58 45.0 3.08e-01 84.9% 29.6%
3907176 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.58 52.0 4.84e-01 100.0% 80.0%
5054152 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.58 49.0 4.23e-01 100.0% 64.0%
4963974 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.58 37.0 2.44e-01 75.3% 14.3%
4290772 825.1.1.2 ↗ beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › ETX_MTX2 0.58 47.0 3.18e-01 89.0% 74.8%
3968270 3103.1.1.2 ↗ alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_13 0.57 50.0 4.38e-01 97.3% 95.5%
4215369 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.56 48.0 4.14e-01 100.0% 64.8%
4941652 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.56 48.0 4.16e-01 100.0% 63.2%
3739406 330.1.1.9 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dcr1-like_dsRNA-bd_dom 0.56 39.0 3.53e-01 79.5% 51.4%
3592295 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 41.0 3.28e-01 80.8% 70.6%
3957089 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 43.0 4.44e-01 84.9% 92.9%
3969015 7503.1.1.8 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136 0.55 42.0 3.38e-01 80.8% 72.9%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.65e-01 100.0% 93.2%
4536848 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 47.0 3.98e-01 100.0% 66.2%
3198319 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 44.0 2.88e-01 89.0% 25.4%
4484391 230.1.1.5 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.54 42.0 3.49e-01 83.6% 59.2%
4943576 4.23.1.0 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.54 45.0 3.90e-01 98.6% 62.4%
3436820 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.54 37.0 2.94e-01 74.0% 100.0%
3190947 2011.1.1.0 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.54 43.0 2.74e-01 87.7% 43.8%
3370992 304.48.1.21 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1,Thg1C 0.54 47.0 2.90e-01 100.0% 25.2%
5019602 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.53 45.0 3.86e-01 94.5% 83.3%
3691196 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 40.0 2.81e-01 87.7% 61.1%
5013823 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.52 42.0 3.65e-01 95.9% 79.2%
4927124 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.52 41.0 3.05e-01 89.0% 59.5%
4983074 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.52 44.0 3.74e-01 100.0% 63.8%
4159896 2003.1.1.59 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.52 43.0 2.80e-01 100.0% 97.3%
3190012 883.1.1.12 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › DUF5923 0.52 41.0 3.03e-01 91.8% 62.7%
4030358 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.51 45.0 3.10e-01 100.0% 52.7%
3454410 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.51 42.0 3.32e-01 91.8% 57.5%
4126255 4967.1.1.25 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N 0.51 42.0 2.80e-01 87.7% 35.3%
3428734 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.51 43.0 2.71e-01 95.9% 22.2%
5033213 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 35.0 3.09e-01 75.3% 90.0%
3475963 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.50 39.0 3.47e-01 84.9% 81.8%
3255418 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.50 39.0 2.54e-01 87.7% 36.6%