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NC_031017.1__YP_009279690.1__BI029_gp10__00010

Bact-Vir

NC_031017.1__YP_009279690.1__BI029_gp10__00010

Identity

Accession:
NC_031017 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactococcus_phage_63301

TaxID: 1871687

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-131
PDB
Domain cluster: rep: HM596271.1__ADP69195.1__X__00011__D9-136
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6v9zA02 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.78 57.0 4.17e-01 75.6% 35.4%
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.77 62.0 6.53e-01 84.0% 97.5%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 54.0 4.90e-01 72.5% 78.6%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 63.0 6.28e-01 90.8% 95.6%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 45.0 5.65e-01 74.8% 98.8%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 50.0 5.72e-01 70.2% 100.0%
2j1dG01 1.20.58.2220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain 0.72 55.0 3.95e-01 80.2% 65.6%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.72 55.0 5.79e-01 80.2% 100.0%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.72 52.0 5.90e-01 77.9% 100.0%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.71 41.0 5.33e-01 70.2% 100.0%
3lbxB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 51.0 5.52e-01 74.0% 98.1%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.71 40.0 4.41e-01 80.9% 68.9%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.70 41.0 4.45e-01 80.9% 67.9%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 47.0 5.07e-01 71.0% 82.1%
2wauA02 1.20.58.830 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 48.0 4.97e-01 73.3% 100.0%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 49.0 5.27e-01 77.1% 99.1%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.67 51.0 5.57e-01 81.7% 99.1%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.66 51.0 5.06e-01 80.2% 86.7%
1tjoB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 52.0 4.71e-01 83.2% 94.3%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.65 46.0 5.00e-01 71.8% 100.0%
2juaA00 1.20.1480.30 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein 0.65 41.0 4.56e-01 73.3% 80.4%
3unoE00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 47.0 4.40e-01 77.1% 86.8%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.64 47.0 4.69e-01 76.3% 96.2%
2fjcB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 45.0 4.26e-01 72.5% 94.2%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 50.0 5.14e-01 86.3% 96.1%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 52.0 5.27e-01 94.7% 93.1%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 47.0 5.03e-01 87.8% 95.6%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.60 42.0 4.22e-01 74.8% 72.3%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 37.0 4.03e-01 76.3% 80.4%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.56 37.0 4.18e-01 75.6% 89.9%
1w9rA00 1.20.58.440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › choline binding protein A 0.53 41.0 4.35e-01 95.4% 89.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3505493 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.80 66.0 6.74e-01 85.5% 92.8%
3615028 622.1.1.1 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.79 57.0 6.21e-01 100.0% 89.1%
3952630 3755.1.1.0 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.76 52.0 5.15e-01 70.2% 87.9%
3884761 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.76 64.0 4.82e-01 90.1% 47.2%
4116939 2004.1.1.525 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_27, SbcC_Walker_B 0.75 52.0 3.43e-01 70.2% 18.5%
3845927 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.75 61.0 5.88e-01 86.3% 92.0%
3504305 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.75 55.0 6.04e-01 75.6% 98.1%
3996707 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.74 55.0 5.99e-01 77.9% 99.1%
3871543 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.74 60.0 6.06e-01 86.3% 93.1%
3676738 6158.1.1.0 ↗ alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region 0.74 51.0 5.12e-01 70.2% 94.6%
3580280 604.1.1.192 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26998 0.73 52.0 5.98e-01 74.0% 100.0%
3474685 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.73 57.0 6.10e-01 82.4% 99.1%
2393178 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 51.0 5.87e-01 73.3% 100.0%
3927597 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.73 58.0 6.06e-01 82.4% 100.0%
3504339 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.73 53.0 5.76e-01 76.3% 100.0%
3941250 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 52.0 5.57e-01 74.0% 100.0%
3484031 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 61.0 6.05e-01 89.3% 95.6%
4971757 5082.1.1.1 ↗ alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.72 50.0 4.30e-01 71.0% 87.0%
3736709 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.72 59.0 4.93e-01 87.8% 69.1%
3361109 604.1.1.100 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › NET2A_C 0.71 55.0 5.69e-01 82.4% 100.0%
3469833 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.71 59.0 6.11e-01 95.4% 95.8%
4337633 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.70 49.0 3.69e-01 72.5% 31.0%
3757568 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.69 51.0 5.54e-01 75.6% 100.0%
4028451 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 49.0 5.07e-01 75.6% 76.0%
3545240 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.69 48.0 5.09e-01 71.8% 92.2%
3398025 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 48.0 5.38e-01 72.5% 100.0%
3894911 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.68 51.0 5.45e-01 78.6% 100.0%
4260209 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.67 49.0 3.19e-01 74.8% 49.9%
3910599 604.1.1.7 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_plectin_7 0.67 51.0 5.41e-01 80.2% 100.0%
4483079 2004.1.1.429 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.66 48.0 3.41e-01 74.8% 29.5%
3880841 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.66 48.0 4.32e-01 74.8% 85.0%
4671 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.66 37.0 4.06e-01 78.6% 65.5%
4410114 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 46.0 3.66e-01 70.2% 95.3%
4028006 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.64 51.0 3.65e-01 90.1% 31.0%
3703409 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.64 57.0 5.09e-01 96.2% 92.2%
3913300 3755.3.1.303 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th 0.63 46.0 4.41e-01 74.8% 88.7%
3707236 3291.1.1.16 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Flagellar_rod 0.63 49.0 4.49e-01 96.2% 61.1%
3579297 603.3.1.1 ↗ alpha bundles › STAT-like › CAPPD, an extracellular domain of amyloid beta A4 protein › CAPPD, an extracellular domain of amyloid beta A4 protein › APP_E2 0.63 47.0 4.37e-01 77.9% 67.3%
3583103 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 49.0 4.26e-01 89.3% 54.8%
3298752 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.62 44.0 4.63e-01 73.3% 85.2%
4523046 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.58 41.0 4.07e-01 72.5% 80.0%
5024994 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.57 46.0 4.84e-01 86.3% 98.3%
3686252 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.54 42.0 3.53e-01 100.0% 52.0%
D2 medium residues 146-254
PDB
Domain cluster: representative