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NC_031020.1__YP_009279894.1__BI036_gp037__00037

Bact-Vir

NC_031020.1__YP_009279894.1__BI036_gp037__00037

Identity

Accession:
NC_031020 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Gualtarvirus› Morganella_phage_vB_MmoM_MP1

TaxID: 1852628

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 124-192
PDB
Domain cluster: rep: OM971648.1__UQJ95330.1__IANJMKHF_00425__00424__D60-126
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u60A03 1.10.8.700 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacteriophage clamp loader A subunit, A domain 0.92 85.0 8.34e-01 100.0% 91.9%
1wy5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 46.0 3.29e-01 87.0% 59.9%
2a19A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.57 40.0 3.76e-01 100.0% 60.0%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.56 45.0 4.31e-01 87.0% 96.2%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.56 48.0 4.09e-01 94.2% 69.1%
1c1kA02 1.10.220.50 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Bacteriophage T4, Gp59, helicase assembly protein, C-terminal domain 0.55 39.0 3.41e-01 100.0% 47.0%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.54 38.0 3.61e-01 73.9% 95.4%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.47e-01 94.2% 47.3%
3h1qA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 48.0 4.00e-01 100.0% 87.8%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.21e-01 78.3% 46.7%
2ychA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 46.0 3.79e-01 100.0% 82.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1019405 101.1.18.1 ↗ alpha arrays › HTH › HTH › HTH domain in DNA polymerase accessory protein 62 › Phage_clamp_A 0.92 85.0 8.22e-01 100.0% 90.7%
3952601 103.12.1.1 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.67 49.0 4.93e-01 100.0% 75.7%
4934615 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.66 58.0 4.15e-01 100.0% 53.5%
3672976 109.26.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C 0.62 45.0 2.69e-01 79.7% 20.7%
3738374 109.4.1.929 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_ECM29 0.58 44.0 3.26e-01 82.6% 74.1%
4139094 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 50.0 4.37e-01 100.0% 66.0%
4534325 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.54 39.0 2.64e-01 81.2% 44.4%
3979125 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.52 47.0 3.29e-01 100.0% 41.4%
D2 medium residues 15-116
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16790.11 best Phage_clamp_A 72.1 9.00e-20 75.5% 53.5%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u60A02 1.20.272.50 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › Bacteriophage clamp loader A subunit, A' domain 0.90 65.0 7.40e-01 76.5% 96.2%
2qebA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 41.0 3.67e-01 76.5% 86.2%
2dwkA00 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.56 41.0 3.55e-01 77.5% 70.2%
3mkzN00 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 36.0 3.58e-01 75.5% 75.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4872354 101.1.18.1 ↗ alpha arrays › HTH › HTH › HTH domain in DNA polymerase accessory protein 62 › Phage_clamp_A 0.75 66.0 6.44e-01 93.1% 92.8%
1019404 138.1.1.7 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Phage_clamp_A 0.74 66.0 6.40e-01 93.1% 92.8%
3611992 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.72 52.0 4.65e-01 75.5% 95.7%