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NC_031020.1__YP_009279925.1__BI036_gp068__00068

Bact-Vir

NC_031020.1__YP_009279925.1__BI036_gp068__00068

Identity

Accession:
NC_031020 ↗
Kingdom:
phage

Quality

68.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Gualtarvirus› Morganella_phage_vB_MmoM_MP1

TaxID: 1852628

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 122-190
PDB
Domain cluster: rep: MN399336.1__QFP93545.1__X__00051__D120-181
D2 medium residues 63-121
PDB
Domain cluster: rep: MZ424863.1__QXO10336.1__X__00019__D73-120
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e9xB01 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.60 42.0 4.11e-01 76.3% 95.5%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.59 48.0 3.07e-01 100.0% 23.4%
1t8rA01 3.30.1730.10 Alpha Beta › 2-Layer Sandwich › amp nucleosidase, domain 1 › AMP nucleoside phosphorylase, N-terminal domain 0.56 45.0 3.50e-01 94.9% 71.5%
2j73A00 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 3.72e-01 89.8% 63.1%
4a4aA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 3.68e-01 100.0% 78.5%
5l73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.41e-01 98.3% 74.7%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.55e-01 93.2% 88.2%
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.81e-01 91.5% 85.4%
2h5fB00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 37.0 3.47e-01 72.9% 58.1%
1oeyA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 44.0 4.03e-01 98.3% 95.1%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 45.0 3.54e-01 100.0% 85.4%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 40.0 3.06e-01 83.1% 97.3%
2i6tA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.52 41.0 3.11e-01 88.1% 82.9%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.52 44.0 3.64e-01 100.0% 80.3%
1m4jA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 38.0 2.97e-01 79.7% 78.2%
4pqqA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 43.0 3.30e-01 98.3% 76.9%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 43.0 3.43e-01 100.0% 83.1%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.58e-01 98.3% 85.2%
3gudA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.34e-01 91.5% 48.7%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 43.0 3.74e-01 100.0% 76.0%
2yc2A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 43.0 3.43e-01 100.0% 84.1%
1sfpA00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.51 41.0 3.52e-01 100.0% 95.5%
1wfjA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 36.0 2.93e-01 78.0% 100.0%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.31e-01 100.0% 82.2%
2a8eA00 3.30.930.20 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 0.51 41.0 2.97e-01 100.0% 43.8%
2mfaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.50 33.0 3.42e-01 71.2% 71.9%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 36.0 2.87e-01 79.7% 39.9%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 41.0 3.26e-01 100.0% 56.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030690 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.59 45.0 3.69e-01 83.1% 55.5%
3517819 11.1.1.203 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 0.58 43.0 3.72e-01 83.1% 65.0%
4033809 10.32.1.260 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › YfhO 0.54 45.0 3.64e-01 100.0% 84.0%
5023022 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.53 43.0 3.85e-01 96.6% 76.7%
3479436 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 42.0 3.71e-01 98.3% 72.0%
3239399 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 44.0 3.36e-01 100.0% 83.7%
3897855 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.52 43.0 3.22e-01 100.0% 85.6%
3898135 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.52 35.0 2.58e-01 72.9% 92.6%
3939889 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.62e-01 94.9% 87.0%
None — 0.52 42.0 2.67e-01 100.0% 44.5%
None — 0.52 42.0 2.87e-01 100.0% 77.4%
3895933 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 42.0 2.71e-01 98.3% 39.4%
3680728 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 41.0 3.91e-01 94.9% 97.3%
3438850 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 2.78e-01 78.0% 76.9%
3508089 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.51 42.0 3.19e-01 100.0% 82.4%
4260102 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 2.41e-01 89.8% 19.3%
3390403 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.51 42.0 3.19e-01 98.3% 100.0%
5005735 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.62e-01 91.5% 88.9%
4537843 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.50 41.0 2.79e-01 100.0% 77.8%
3323944 11.1.1.203 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 0.50 38.0 3.28e-01 89.8% 85.5%