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NC_031020.1__YP_009279934.1__BI036_gp077__00077

Bact-Vir

NC_031020.1__YP_009279934.1__BI036_gp077__00077

Identity

Accession:
NC_031020 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Gualtarvirus› Morganella_phage_vB_MmoM_MP1

TaxID: 1852628

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-73
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.68 49.0 3.56e-01 76.1% 66.3%
5kdiA00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.68 53.0 3.85e-01 85.9% 29.9%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 46.0 4.12e-01 74.6% 63.6%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 40.0 4.38e-01 88.7% 76.3%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 44.0 4.40e-01 91.5% 74.0%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 48.0 4.59e-01 95.8% 72.3%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 51.0 3.36e-01 98.6% 29.0%
3ecsC01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.58 46.0 4.29e-01 95.8% 93.0%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.58 44.0 3.95e-01 84.5% 76.2%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.89e-01 77.5% 62.8%
3gruA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.56 48.0 4.56e-01 100.0% 93.0%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 37.0 3.69e-01 87.3% 64.9%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.56 48.0 3.76e-01 91.5% 46.2%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 43.0 4.10e-01 90.1% 71.4%
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.55 46.0 4.21e-01 91.5% 69.6%
2ko6A00 1.10.1580.20 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › Protein of unknown function DUF1040 0.55 34.0 3.19e-01 90.1% 49.4%
4fcgA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.54 38.0 2.55e-01 76.1% 22.3%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.93e-01 83.1% 95.1%
3qxyA02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.52 37.0 2.90e-01 76.1% 51.5%
1ng6A02 1.10.10.410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.51 37.0 4.02e-01 83.1% 93.0%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.51 36.0 3.62e-01 76.1% 78.7%
2xs1A01 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.50 37.0 2.50e-01 84.5% 55.7%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.50 39.0 4.07e-01 95.8% 96.8%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3258173 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 48.0 5.34e-01 91.5% 92.7%
3207381 631.1.1.1 ↗ alpha arrays › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › Glycolipid transfer protein, GLTP › GLTP 0.69 53.0 3.91e-01 84.5% 32.3%
3869172 5000.3.1.0 ↗ alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death 0.65 49.0 3.71e-01 78.9% 43.1%
3792916 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.65 47.0 4.66e-01 77.5% 89.3%
3773235 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.64 35.0 3.22e-01 100.0% 41.1%
4059363 142.3.1.1 ↗ alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C 0.59 41.0 3.89e-01 74.6% 82.2%
3576763 101.1.1.332 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Nucleolin_bd 0.59 42.0 4.33e-01 88.7% 83.1%
4935481 633.12.1.0 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.59 49.0 4.40e-01 98.6% 74.3%
5084007 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 41.0 4.02e-01 87.3% 69.3%
5057991 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.98e-01 90.1% 74.3%
3991367 101.1.2.558 ↗ alpha arrays › HTH › HTH › winged helix domain › CCD_aECM 0.56 40.0 4.36e-01 94.4% 100.0%
3479514 101.1.2.318 ↗ alpha arrays › HTH › HTH › winged helix domain › HSD3 0.56 42.0 4.26e-01 87.3% 81.4%
3793382 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.55 41.0 3.75e-01 81.7% 75.0%
5062159 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.55 39.0 4.11e-01 76.1% 100.0%
3784553 592.1.1.6 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 0.55 38.0 3.69e-01 74.6% 76.5%
3728722 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 46.0 3.30e-01 100.0% 78.8%
3583380 101.1.2.558 ↗ alpha arrays › HTH › HTH › winged helix domain › CCD_aECM 0.54 37.0 4.00e-01 100.0% 86.7%
5022018 4973.1.1.0 ↗ alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core 0.53 36.0 3.69e-01 85.9% 71.4%
3943035 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.52 39.0 4.03e-01 93.0% 87.7%
5007881 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.52 40.0 3.75e-01 84.5% 72.2%
3262083 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.52 37.0 3.28e-01 76.1% 79.0%
3731082 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 37.0 3.68e-01 77.5% 85.3%
3488077 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.50 37.0 3.35e-01 77.5% 86.3%
3938380 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.50 36.0 3.58e-01 78.9% 73.3%