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NC_031020.1__YP_009280068.1__BI036_gp184__00211

Bact-Vir

NC_031020.1__YP_009280068.1__BI036_gp184__00211

Identity

Accession:
NC_031020 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-79
PDB
CATH (64)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.73 61.0 6.02e-01 100.0% 85.5%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 53.0 5.48e-01 100.0% 82.4%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.72 60.0 5.67e-01 100.0% 77.4%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 47.0 5.49e-01 100.0% 100.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 48.0 5.20e-01 100.0% 84.7%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 5.36e-01 100.0% 85.5%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 48.0 4.93e-01 100.0% 73.5%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 49.0 4.83e-01 100.0% 67.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 45.0 5.36e-01 94.4% 100.0%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.70 54.0 4.89e-01 100.0% 62.1%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 45.0 4.70e-01 100.0% 73.4%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.69 57.0 5.58e-01 100.0% 85.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 4.95e-01 100.0% 78.5%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.68 40.0 4.55e-01 95.8% 80.4%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 58.0 5.75e-01 100.0% 90.5%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 44.0 4.83e-01 100.0% 87.7%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 5.20e-01 100.0% 95.0%
3d3rA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.33e-01 94.4% 62.7%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 48.0 4.97e-01 100.0% 86.2%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 47.0 4.61e-01 100.0% 70.9%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 51.0 4.30e-01 88.7% 79.0%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 48.0 5.21e-01 98.6% 96.7%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 4.58e-01 100.0% 71.6%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 52.0 4.12e-01 93.0% 65.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 48.0 4.88e-01 100.0% 84.3%
2b9wA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 51.0 3.69e-01 93.0% 84.8%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 52.0 3.98e-01 95.8% 50.6%
4c3xA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 51.0 3.29e-01 95.8% 68.2%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 51.0 4.02e-01 95.8% 48.4%
1f8wA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 49.0 3.85e-01 93.0% 70.7%
4eqsA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 50.0 3.85e-01 93.0% 70.6%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 4.41e-01 91.5% 92.2%
2bc0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.61e-01 94.4% 53.5%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 43.0 4.41e-01 85.9% 79.1%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 44.0 4.42e-01 100.0% 78.6%
4udqA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.27e-01 95.8% 77.1%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 45.0 4.90e-01 100.0% 100.0%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 46.0 4.78e-01 100.0% 89.6%
3icsA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 49.0 3.66e-01 94.4% 75.9%
3oc4B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 49.0 3.75e-01 95.8% 54.9%
5bulA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 49.0 3.14e-01 95.8% 38.3%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 43.0 4.68e-01 100.0% 98.2%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.94e-01 100.0% 100.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 4.38e-01 74.6% 86.9%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 46.0 4.58e-01 100.0% 85.3%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 48.0 3.35e-01 97.2% 94.9%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 35.0 4.01e-01 87.3% 91.5%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.56 47.0 3.01e-01 98.6% 37.2%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 4.01e-01 78.9% 75.7%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 33.0 3.33e-01 100.0% 58.0%
1q1rA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 3.34e-01 94.4% 74.4%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 47.0 3.81e-01 95.8% 83.7%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 3.50e-01 100.0% 64.6%
8f5dA05 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.54 43.0 3.13e-01 90.1% 83.7%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 39.0 2.99e-01 78.9% 75.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.39e-01 94.4% 97.5%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 41.0 3.11e-01 84.5% 96.2%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.53 42.0 3.34e-01 91.5% 95.2%
4c12A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 43.0 3.00e-01 88.7% 84.9%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 41.0 3.19e-01 84.5% 78.5%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 2.84e-01 90.1% 30.6%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.52 41.0 3.64e-01 84.5% 91.1%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.46e-01 85.9% 79.3%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.51 37.0 3.71e-01 100.0% 77.5%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3519125 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 50.0 5.80e-01 98.6% 92.0%
4583465 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.78 47.0 5.45e-01 100.0% 86.0%
4585317 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.76 47.0 5.21e-01 100.0% 80.0%
4030943 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.75 62.0 6.00e-01 100.0% 81.0%
4930563 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.75 59.0 5.96e-01 98.6% 85.7%
5001481 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.75 63.0 6.20e-01 100.0% 86.7%
5027286 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.74 63.0 5.93e-01 100.0% 76.5%
5040422 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.74 61.0 6.07e-01 97.2% 85.3%
5072519 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.74 62.0 6.14e-01 100.0% 86.7%
4947702 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 62.0 6.16e-01 98.6% 86.7%
4033110 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.74 62.0 6.12e-01 100.0% 86.7%
5042313 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.74 60.0 5.97e-01 100.0% 84.0%
5049033 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.73 62.0 6.11e-01 100.0% 86.7%
5042892 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.73 51.0 5.47e-01 100.0% 85.0%
4984041 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.73 60.0 5.97e-01 98.6% 85.3%
5072949 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.73 55.0 5.72e-01 97.2% 86.2%
3476478 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 47.0 4.28e-01 100.0% 49.5%
3386779 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.73 61.0 6.02e-01 100.0% 87.8%
2499682 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.73 61.0 5.96e-01 100.0% 83.3%
5067227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 56.0 5.34e-01 100.0% 71.1%
5055435 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.72 59.0 6.02e-01 97.2% 90.0%
3979986 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.72 62.0 6.14e-01 100.0% 89.3%
4941299 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.72 52.0 4.90e-01 95.8% 63.5%
1678740 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.72 60.0 5.81e-01 100.0% 83.3%
4984135 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.71 60.0 5.71e-01 100.0% 78.6%
5030535 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.71 60.0 5.93e-01 100.0% 88.0%
3839852 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.71 60.0 5.91e-01 100.0% 88.0%
4978819 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.70 59.0 5.71e-01 100.0% 82.5%
4952214 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.70 58.0 5.72e-01 98.6% 85.3%
3525406 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.70 48.0 4.15e-01 100.0% 46.4%
4975478 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.70 63.0 5.96e-01 100.0% 85.9%
3941391 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 43.0 4.71e-01 95.8% 75.0%
4587271 9002.1.1.1 a/b three-layered sandwiches › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 0.70 34.0 3.96e-01 81.7% 64.0%
3672445 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 48.0 3.77e-01 100.0% 35.2%
5050368 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.70 55.0 4.97e-01 100.0% 62.2%
4952478 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 56.0 5.55e-01 98.6% 84.0%
135285 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 57.0 5.54e-01 100.0% 83.3%
4470603 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.68 48.0 3.63e-01 100.0% 32.1%
3490689 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 50.0 5.07e-01 100.0% 81.4%
4013671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 48.0 5.36e-01 98.6% 100.0%
4020558 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.12e-01 100.0% 87.7%
3399557 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.98e-01 100.0% 81.4%
4937705 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.65 49.0 4.57e-01 100.0% 64.4%
4177200 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.65 43.0 4.68e-01 100.0% 87.3%
3599257 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 48.0 5.05e-01 100.0% 87.7%
3393347 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 46.0 4.30e-01 100.0% 60.0%
3170922 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 46.0 4.75e-01 95.8% 79.4%
5032252 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 39.0 4.60e-01 83.1% 88.0%
4508412 4.1.1.437 beta barrels › SH3 › SH3 › SH3 › PF29224 0.63 47.0 4.99e-01 100.0% 95.0%
4927532 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.62 47.0 3.94e-01 100.0% 46.4%
4983862 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.61 50.0 3.84e-01 93.0% 73.7%
4948126 2003.1.2.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.61 49.0 3.81e-01 93.0% 73.7%
4180663 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.61 47.0 3.88e-01 95.8% 47.2%
4971439 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.61 50.0 3.80e-01 94.4% 75.7%
5015828 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.61 49.0 3.83e-01 93.0% 72.4%
3281454 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.60 50.0 3.16e-01 94.4% 72.8%
3955471 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.60 50.0 3.10e-01 95.8% 57.0%
3941004 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.12e-01 100.0% 67.5%
3273029 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 49.0 3.41e-01 94.4% 60.8%
3483375 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.84e-01 100.0% 86.7%
5059422 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 49.0 3.30e-01 97.2% 40.0%
1171260 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 49.0 4.44e-01 95.8% 91.1%
4265586 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 47.0 3.87e-01 97.2% 48.8%
3957580 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 49.0 3.90e-01 95.8% 66.5%
2632340 2003.1.2.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 49.0 4.16e-01 97.2% 88.8%
194032 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 45.0 4.39e-01 100.0% 75.0%
3612092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 52.0 5.15e-01 97.2% 94.7%
3539094 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.65e-01 100.0% 82.5%
3951184 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.58 50.0 3.08e-01 100.0% 38.3%
340344 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 48.0 4.15e-01 97.2% 90.8%
3280885 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.57 47.0 3.03e-01 95.8% 61.1%
3732704 5.1.4.80 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_b_propeller 0.56 46.0 2.84e-01 88.7% 32.1%
1269798 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 46.0 3.98e-01 97.2% 86.5%
4953863 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.56 45.0 3.12e-01 90.1% 85.4%
4276713 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.55 44.0 3.05e-01 88.7% 80.4%
3992596 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.39e-01 94.4% 36.0%
4103125 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 47.0 3.54e-01 97.2% 56.8%
3620293 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.59e-01 87.3% 70.0%
3195050 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 47.0 4.31e-01 95.8% 75.8%
3405815 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.53 33.0 3.84e-01 87.3% 90.0%
4282601 2.1.1.84 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.53 42.0 3.68e-01 87.3% 60.0%
D2 high residues 88-130
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5yuyA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.74 64.0 4.65e-01 100.0% 75.4%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.71 61.0 4.45e-01 100.0% 68.0%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.71 57.0 4.86e-01 100.0% 54.9%
1s5jA03 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.70 60.0 4.11e-01 100.0% 75.2%
1nnnA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.69 52.0 3.89e-01 86.0% 96.7%
2pk0A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.68 52.0 3.29e-01 86.0% 36.4%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.68 56.0 4.90e-01 97.7% 98.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.68 58.0 3.91e-01 100.0% 46.7%
2knrA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.67 50.0 3.79e-01 86.0% 83.1%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.66 53.0 5.18e-01 100.0% 86.0%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.65 53.0 3.84e-01 100.0% 47.4%
3dadA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 43.0 2.61e-01 72.1% 17.6%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 53.0 4.26e-01 100.0% 45.7%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.64 49.0 3.55e-01 100.0% 27.0%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 52.0 4.38e-01 100.0% 87.7%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.60 44.0 2.97e-01 79.1% 73.8%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 46.0 4.11e-01 100.0% 67.1%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 44.0 3.10e-01 79.1% 89.3%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 47.0 3.59e-01 95.3% 39.7%
3o2sB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 51.0 3.66e-01 100.0% 43.3%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 44.0 3.77e-01 100.0% 45.8%
1xgsA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.74e-01 83.7% 79.2%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.58 41.0 3.00e-01 81.4% 28.9%
1whvA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 47.0 3.75e-01 100.0% 66.0%
2k18A02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 44.0 3.24e-01 88.4% 30.9%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 47.0 3.77e-01 97.7% 91.5%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 44.0 3.45e-01 100.0% 89.3%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 46.0 3.79e-01 100.0% 53.3%
4jxuA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.56 44.0 3.24e-01 90.7% 55.8%
3ie7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 40.0 2.57e-01 90.7% 17.5%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 44.0 3.65e-01 100.0% 47.9%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.61e-01 100.0% 50.0%
3sz6A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 43.0 3.42e-01 100.0% 91.4%
4n2kA01 2.60.40.1860 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain 0.55 40.0 2.96e-01 100.0% 28.6%
1l3lA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 44.0 3.00e-01 90.7% 92.4%
4ccjA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.55 39.0 2.59e-01 100.0% 15.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.55 44.0 3.99e-01 100.0% 66.7%
3kuzB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 47.0 3.52e-01 97.7% 88.1%
1pzxA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.54 39.0 4.10e-01 100.0% 100.0%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.54 40.0 2.89e-01 88.4% 38.6%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 44.0 3.44e-01 100.0% 42.1%
3hrpA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.55e-01 100.0% 44.2%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 45.0 3.83e-01 100.0% 74.7%
2iq1A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 43.0 2.82e-01 100.0% 27.2%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.53 42.0 3.04e-01 90.7% 71.4%
6dgiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 42.0 3.04e-01 93.0% 75.0%
4x9xA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 42.0 3.00e-01 97.7% 55.0%
2i0oA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 37.0 2.37e-01 86.0% 37.6%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.18e-01 100.0% 43.0%
4ehoB03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.51 37.0 2.59e-01 88.4% 27.4%
2kd0A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 40.0 3.59e-01 97.7% 91.5%
4jcwA02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.50 43.0 3.40e-01 100.0% 46.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4048407 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.79 70.0 5.70e-01 100.0% 90.0%
3972855 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.77 69.0 5.72e-01 100.0% 92.0%
3976762 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.77 69.0 5.70e-01 100.0% 93.3%
4961283 101.1.2.935 alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.72 58.0 4.39e-01 100.0% 36.7%
4284745 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.72 62.0 4.55e-01 100.0% 69.2%
5043528 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.71 61.0 4.48e-01 100.0% 68.3%
3603883 304.48.1.22 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.70 60.0 4.33e-01 100.0% 63.8%
3621505 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.70 52.0 4.01e-01 83.7% 41.9%
4676848 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.69 58.0 4.94e-01 100.0% 90.7%
4394562 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.68 47.0 2.69e-01 74.4% 38.9%
4147528 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.67 56.0 4.90e-01 100.0% 98.6%
4448678 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.67 57.0 4.80e-01 100.0% 96.0%
5038375 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.64 49.0 3.23e-01 86.0% 27.5%
3378740 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.62 47.0 2.55e-01 81.4% 61.0%
5071118 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.62 50.0 4.53e-01 97.7% 98.5%
4231372 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.62 51.0 4.51e-01 100.0% 98.6%
3987241 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.62 48.0 3.54e-01 100.0% 98.6%
5050481 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 47.0 3.36e-01 86.0% 94.2%
3258276 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.61 46.0 2.97e-01 83.7% 38.7%
3281602 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.61 51.0 4.97e-01 100.0% 85.4%
3862518 4076.1.1.2 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI 0.60 48.0 4.54e-01 100.0% 72.7%
3721040 4176.1.1.2 a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.60 50.0 3.20e-01 100.0% 18.0%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 46.0 4.42e-01 100.0% 79.3%
3588327 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.60 43.0 3.05e-01 79.1% 100.0%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 46.0 4.58e-01 100.0% 86.0%
3181846 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 46.0 3.68e-01 86.0% 95.6%
4944314 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 44.0 3.26e-01 83.7% 83.2%
3898409 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.58 47.0 3.79e-01 100.0% 44.0%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.58 46.0 4.33e-01 100.0% 83.3%
3958896 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.58 45.0 4.26e-01 100.0% 73.3%
3802249 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.58 46.0 2.61e-01 90.7% 8.1%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.58 44.0 4.41e-01 100.0% 88.9%
4667951 4007.1.1.0 a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins 0.57 45.0 3.78e-01 100.0% 48.9%
4120969 4007.1.1.1 a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.57 45.0 3.59e-01 100.0% 41.9%
5006516 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.56 45.0 3.15e-01 90.7% 85.3%
3390562 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 45.0 4.01e-01 100.0% 60.0%
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.56 42.0 4.18e-01 100.0% 82.0%
4458441 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.56 43.0 3.07e-01 90.7% 61.3%
3920703 10.12.1.40 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.56 40.0 2.51e-01 100.0% 11.9%
3699329 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.56 42.0 2.51e-01 79.1% 67.3%
1844216 4007.1.1.1 a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.55 42.0 4.18e-01 100.0% 86.3%
5018298 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.55 46.0 3.50e-01 100.0% 72.2%
5010744 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 43.0 3.90e-01 93.0% 100.0%
4956654 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.55 42.0 2.79e-01 86.0% 96.4%
3428608 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.55 48.0 3.59e-01 100.0% 41.7%
2982157 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.54 44.0 2.90e-01 90.7% 37.0%
3505782 7508.1.1.1 a/b three-layered sandwiches › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › Glyco_transf_90 0.53 39.0 3.05e-01 88.4% 35.0%
3621341 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 45.0 3.85e-01 100.0% 98.7%
3595003 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.52 39.0 3.71e-01 100.0% 76.7%
3264069 822.1.1.2 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.51 42.0 3.91e-01 100.0% 76.7%
None 0.50 42.0 3.36e-01 100.0% 87.4%
3738589 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.50 40.0 3.18e-01 100.0% 46.7%
4943853 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 44.0 3.06e-01 100.0% 87.6%