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NC_031023.1__YP_009280367.1__BIZ98_gp41__00041

Bact-Vir

NC_031023.1__YP_009280367.1__BIZ98_gp41__00041

Identity

Accession:
NC_031023 ↗
Kingdom:
phage

Quality

69.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-70
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.75 51.0 4.43e-01 75.0% 45.7%
4eo0A00 3.30.110.160 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.73 61.0 5.08e-01 95.0% 68.9%
4bpeC01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.72 55.0 4.85e-01 93.3% 55.4%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.72 54.0 3.33e-01 81.7% 93.1%
1tluA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.72 47.0 3.84e-01 75.0% 35.0%
3iwcB00 3.30.360.110 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase domain 0.71 46.0 4.67e-01 75.0% 67.2%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.70 49.0 4.40e-01 75.0% 53.7%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.70 54.0 4.50e-01 86.7% 84.4%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.69 44.0 4.01e-01 70.0% 47.1%
7jrjK01 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.69 46.0 3.41e-01 70.0% 41.7%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 45.0 3.98e-01 70.0% 47.2%
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 44.0 4.21e-01 75.0% 57.5%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 43.0 3.91e-01 75.0% 50.6%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 43.0 3.70e-01 75.0% 42.1%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.65 44.0 3.88e-01 73.3% 47.2%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.65 50.0 3.56e-01 83.3% 54.5%
1fvzA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 49.0 3.17e-01 81.7% 24.5%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.64 49.0 4.75e-01 85.0% 92.6%
1vq8S00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 44.0 4.05e-01 75.0% 54.3%
5x8tT00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.64 52.0 4.00e-01 91.7% 68.8%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 42.0 3.94e-01 70.0% 53.9%
5fiiB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 42.0 3.89e-01 70.0% 57.7%
3fncB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 46.0 3.46e-01 81.7% 87.6%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.62 50.0 3.80e-01 91.7% 84.3%
3bh7B02 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.62 43.0 3.52e-01 75.0% 52.1%
1n6zA00 3.10.20.250 Alpha Beta › Roll › Ubiquitin-like (UB roll) › YML108W-like 0.62 44.0 3.70e-01 81.7% 42.9%
2cg8B02 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.62 43.0 3.39e-01 75.0% 33.3%
2iiiA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.61 41.0 3.34e-01 70.0% 50.0%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.60 49.0 3.28e-01 91.7% 41.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.06e-01 75.0% 70.8%
1y0hB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 41.0 3.52e-01 81.7% 43.9%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 39.0 3.62e-01 73.3% 49.4%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.60 47.0 3.34e-01 86.7% 60.1%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 39.0 3.59e-01 73.3% 48.8%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.59 52.0 3.31e-01 100.0% 71.8%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 48.0 3.28e-01 91.7% 69.2%
3pp9B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 40.0 2.92e-01 70.0% 81.6%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 39.0 3.57e-01 73.3% 47.8%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.58 44.0 3.47e-01 85.0% 58.6%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.58 46.0 3.11e-01 90.0% 40.4%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.58 43.0 3.18e-01 81.7% 60.9%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.56 39.0 3.78e-01 75.0% 76.5%
2cy2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 43.0 3.19e-01 88.3% 87.4%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 39.0 2.63e-01 78.3% 76.2%
4m3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 39.0 2.94e-01 78.3% 45.9%
2lu1A00 3.30.70.2370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 42.0 3.77e-01 93.3% 61.8%
1lq9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 3.27e-01 81.7% 45.5%
1bryY02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.53 40.0 3.63e-01 86.7% 60.0%
1vwxg01 6.20.370.70 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.53 32.0 3.59e-01 75.0% 97.3%
4hr6B02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.51 40.0 3.64e-01 91.7% 81.4%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3709022 327.4.1.0 a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain 0.80 60.0 5.23e-01 81.7% 53.3%
3436180 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.79 55.0 5.22e-01 80.0% 62.9%
148700 304.12.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C 0.75 51.0 4.43e-01 75.0% 45.7%
3970545 310.3.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM 0.75 47.0 4.28e-01 70.0% 48.1%
3971355 304.12.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C 0.74 51.0 4.60e-01 75.0% 51.8%
3164326 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 48.0 4.50e-01 75.0% 54.8%
3988189 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 48.0 4.43e-01 75.0% 51.2%
3598535 324.1.1.0 a+b two layers › OsmC-like › OsmC-like › OsmC-like 0.73 58.0 5.09e-01 93.3% 57.8%
3642698 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.73 49.0 5.12e-01 80.0% 76.4%
3998938 6110.1.1.1 alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.71 60.0 3.51e-01 93.3% 18.6%
5044954 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 48.0 4.44e-01 75.0% 53.8%
3169544 3922.1.1.138 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Utp11 0.71 50.0 3.67e-01 75.0% 40.0%
3434168 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.70 46.0 3.88e-01 73.3% 39.0%
3246937 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 50.0 4.78e-01 80.0% 65.7%
4194812 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.69 45.0 3.66e-01 73.3% 34.2%
3164917 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.69 45.0 4.14e-01 70.0% 51.2%
4300927 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 49.0 3.98e-01 80.0% 40.0%
4292806 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 45.0 3.79e-01 73.3% 39.0%
3838547 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.68 45.0 4.15e-01 73.3% 51.9%
4575908 304.8.1.53 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.68 45.0 3.58e-01 70.0% 32.8%
4468514 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 45.0 4.07e-01 70.0% 51.2%
4886051 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.68 45.0 4.11e-01 75.0% 51.2%
4960647 3535.1.1.0 a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 0.68 43.0 3.54e-01 70.0% 33.9%
4459698 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.68 47.0 4.41e-01 73.3% 58.7%
5081721 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 45.0 4.53e-01 75.0% 68.3%
4599086 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 44.0 3.90e-01 70.0% 46.1%
3365716 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.67 45.0 4.09e-01 75.0% 49.4%
4958500 3261.1.1.0 a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb 0.67 41.0 4.19e-01 70.0% 61.7%
3960213 304.156.1.5 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › PF31086 0.67 53.0 4.40e-01 91.7% 62.6%
4956970 331.10.2.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.67 44.0 3.62e-01 70.0% 35.7%
3672469 304.55.1.18 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › ACT 0.66 44.0 3.41e-01 75.0% 30.1%
4940810 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 45.0 4.43e-01 70.0% 66.7%
5065805 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.66 44.0 3.96e-01 73.3% 48.2%
4504111 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.66 43.0 4.03e-01 75.0% 51.2%
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.66 51.0 4.43e-01 98.3% 55.6%
4647496 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.65 43.0 4.00e-01 75.0% 54.7%
4993405 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.65 43.0 4.04e-01 70.0% 54.7%
4940690 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 43.0 4.28e-01 75.0% 66.7%
3313182 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.64 50.0 4.84e-01 88.3% 81.4%
4595166 5076.2.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.64 53.0 3.65e-01 96.7% 40.0%
4390550 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 44.0 3.68e-01 73.3% 39.0%
4953681 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.64 42.0 3.92e-01 70.0% 51.2%
4263573 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.63 42.0 3.95e-01 73.3% 54.7%
3321864 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 42.0 3.47e-01 73.3% 37.3%
5003605 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.63 42.0 4.00e-01 70.0% 56.0%
3839866 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.62 41.0 3.64e-01 73.3% 45.6%
3164010 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.62 41.0 3.77e-01 73.3% 51.2%
3650594 304.8.1.47 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd 0.62 52.0 3.82e-01 100.0% 33.3%
4266402 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.61 41.0 3.26e-01 70.0% 92.8%
4673811 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.61 40.0 3.63e-01 73.3% 46.1%
5046451 139.2.1.0 few secondary structure elements › Multiheme cytochromes › Di-heme elbow motif › Di-heme elbow motif 0.59 45.0 3.01e-01 85.0% 64.2%
5029718 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.58 49.0 3.07e-01 96.7% 62.1%
5036065 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 43.0 4.09e-01 85.0% 70.7%
5083223 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 46.0 3.65e-01 90.0% 91.5%
5884 327.1.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Alpha-lytic protease prodomain › Alpha-lytic protease prodomain 0.57 44.0 4.13e-01 90.0% 71.2%
4939656 2008.1.1.102 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF1829 0.57 42.0 3.33e-01 91.7% 38.4%
3611407 306.10.1.0 a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 0.56 45.0 3.51e-01 86.7% 83.6%
3924269 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 44.0 2.96e-01 90.0% 34.7%
5072291 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.54 43.0 3.08e-01 85.0% 74.7%
4961073 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.46e-01 95.0% 62.9%
3585959 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.53 43.0 2.83e-01 90.0% 39.3%
3478869 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 45.0 3.02e-01 96.7% 45.3%
4954444 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.52 39.0 2.85e-01 80.0% 42.4%
3246486 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 43.0 2.98e-01 95.0% 48.0%
3936762 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 43.0 2.90e-01 95.0% 45.0%
3818551 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 43.0 2.89e-01 96.7% 52.4%