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NC_031028.1__YP_009281114.1__KCH37_gp11__00011

Bact-Vir

NC_031028.1__YP_009281114.1__KCH37_gp11__00011

Identity

Accession:
NC_031028 ↗
Kingdom:
phage

Quality

66.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-188
PDB
D2 high residues 202-281
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.71 56.0 5.50e-01 100.0% 80.0%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 52.0 5.41e-01 100.0% 86.5%
2wy3B00 2.60.40.1990 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 59.0 4.97e-01 100.0% 67.9%
2xwxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 57.0 5.14e-01 96.2% 90.7%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.61 52.0 4.73e-01 97.5% 83.3%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 46.0 4.09e-01 86.3% 56.1%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.61 36.0 3.79e-01 83.7% 64.8%
1wqwA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 53.0 4.02e-01 97.5% 58.8%
5suvC00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.60 47.0 4.05e-01 85.0% 97.6%
4fppA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.59 40.0 3.40e-01 70.0% 63.5%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.58 44.0 4.53e-01 97.5% 89.3%
3l1aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 50.0 3.68e-01 97.5% 54.2%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 4.53e-01 100.0% 89.3%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 51.0 5.06e-01 100.0% 96.5%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 44.0 3.71e-01 85.0% 67.8%
1yjdC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 51.0 4.49e-01 100.0% 80.5%
1vqzA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 50.0 3.58e-01 98.8% 54.5%
3qqnA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 50.0 4.46e-01 100.0% 79.3%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.57 51.0 4.92e-01 100.0% 92.2%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 43.0 4.04e-01 93.8% 64.7%
5t8uB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 49.0 3.48e-01 98.8% 50.0%
3ecqA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 47.0 3.31e-01 95.0% 74.5%
2zxqA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 46.0 3.24e-01 95.0% 73.9%
4hvmD02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.56 47.0 3.60e-01 96.2% 93.9%
7kjhC01 2.60.40.2860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 4.21e-01 100.0% 74.2%
2oezA01 2.60.440.10 Mainly Beta › Sandwich › YacF-like › YacF-like domains 0.55 37.0 3.78e-01 95.0% 71.8%
4wxaA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.54 43.0 4.32e-01 97.5% 83.3%
2e5aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 46.0 3.43e-01 98.8% 83.9%
3njcA00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.54 44.0 3.61e-01 91.3% 86.9%
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.99e-01 100.0% 70.8%
2h00B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 41.0 3.10e-01 85.0% 39.5%
1zczA03 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.53 37.0 3.26e-01 73.8% 91.3%
5hsqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 42.0 3.63e-01 86.3% 63.6%
2zwsA02 2.60.40.2300 Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain 0.53 48.0 4.02e-01 100.0% 72.4%
2vo8A00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.76e-01 100.0% 56.3%
3hr6A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.71e-01 100.0% 56.1%
2nykA02 2.60.40.2530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 4.01e-01 100.0% 80.5%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 39.0 3.50e-01 100.0% 57.9%
1xauA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.09e-01 100.0% 76.0%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.51 38.0 3.83e-01 82.5% 84.3%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 42.0 4.04e-01 100.0% 81.5%
1y8oA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 37.0 2.97e-01 78.8% 88.2%
4anoA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 44.0 3.25e-01 97.5% 54.5%
1g0dA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 3.72e-01 100.0% 69.3%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3759359 3019.1.1.0 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.78 72.0 6.42e-01 100.0% 88.2%
3916385 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.67 59.0 5.44e-01 100.0% 88.6%
3516782 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.67 47.0 3.91e-01 92.5% 43.3%
3166067 3019.1.1.7 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Phage_sheath_domII 0.66 59.0 5.40e-01 100.0% 90.5%
5066702 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.65 39.0 4.02e-01 85.0% 62.7%
3784165 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.65 56.0 5.40e-01 100.0% 83.3%
4006337 3019.1.1.1 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.64 57.0 5.07e-01 100.0% 86.1%
3386233 314.1.1.6 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.63 55.0 4.25e-01 96.2% 58.9%
2083577 3019.1.1.1 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.62 55.0 4.81e-01 100.0% 82.3%
3460420 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.62 56.0 5.14e-01 100.0% 85.7%
3478525 320.1.1.7 a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N 0.62 37.0 3.82e-01 83.7% 62.7%
4027999 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.61 35.0 3.51e-01 82.5% 52.9%
4964629 101.1.2.922 alpha arrays › HTH › HTH › winged helix domain › DUF7123 0.60 39.0 4.15e-01 82.5% 76.8%
5027191 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.59 35.0 3.70e-01 82.5% 65.7%
3573519 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.68e-01 100.0% 77.9%
3528892 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.59 49.0 3.49e-01 100.0% 29.6%
4130677 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.59 46.0 4.86e-01 100.0% 98.6%
3847407 327.11.2.23 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_8 0.58 43.0 4.29e-01 97.5% 75.3%
3543172 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 4.01e-01 100.0% 51.0%
3268309 223.1.1.8 a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE 0.58 45.0 3.08e-01 85.0% 46.9%
3249790 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.58 50.0 3.63e-01 97.5% 33.9%
5070214 304.57.1.0 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.58 51.0 4.67e-01 100.0% 78.1%
4989614 328.5.1.0 a+b two layers › IF3-like › SirA-like › SirA-like 0.58 42.0 4.48e-01 78.8% 100.0%
3573006 327.11.2.54 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_5 0.58 45.0 4.66e-01 98.8% 93.3%
3717242 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 51.0 4.16e-01 100.0% 85.3%
4129360 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.57 47.0 4.88e-01 100.0% 98.7%
1447918 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.57 44.0 4.54e-01 100.0% 91.8%
4976546 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 3.98e-01 100.0% 64.0%
4394964 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.57 41.0 2.99e-01 97.5% 25.1%
4937853 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.56 42.0 4.43e-01 97.5% 90.0%
5051358 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.92e-01 100.0% 61.9%
4599652 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.56 47.0 4.77e-01 100.0% 95.0%
3306726 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 35.0 3.59e-01 86.3% 65.0%
3220487 256.1.1.0 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.55 36.0 4.17e-01 83.7% 96.4%
3970177 812.1.1.0 a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain 0.55 41.0 4.05e-01 87.5% 75.0%
3738492 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.55 45.0 4.63e-01 97.5% 97.3%
3852395 11.1.1.297 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.55 47.0 3.77e-01 100.0% 49.3%
5042213 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.55 43.0 4.38e-01 97.5% 87.5%
3268478 3122.1.1.0 a+b complex topology › MESD › MESD › MESD 0.55 48.0 4.71e-01 100.0% 95.3%
3865044 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.55 44.0 4.28e-01 97.5% 79.5%
4553885 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.55 47.0 4.76e-01 100.0% 95.0%
4927268 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.55 43.0 4.31e-01 98.8% 85.0%
4438667 304.42.1.0 a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC 0.55 48.0 4.40e-01 100.0% 81.9%
3478311 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.22e-01 100.0% 70.9%
4382604 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 39.0 3.65e-01 85.0% 59.0%
4679312 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.54 46.0 4.67e-01 100.0% 96.2%
4962898 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.54 43.0 4.21e-01 97.5% 79.8%
5047612 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.54 42.0 4.36e-01 96.2% 92.0%
2391407 12.3.1.35 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GalA_N 0.54 43.0 3.35e-01 90.0% 73.8%
5035849 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.54 40.0 4.06e-01 96.2% 82.3%
4177299 301.8.1.0 a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase 0.53 42.0 3.78e-01 86.3% 89.6%
4940284 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.53 41.0 4.19e-01 97.5% 89.3%
4121833 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.53 40.0 3.98e-01 82.5% 85.9%
4668421 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.53 45.0 4.56e-01 100.0% 96.2%
3271101 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.52 41.0 4.17e-01 97.5% 87.5%
3730494 11.1.1.962 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7077 0.51 45.0 3.83e-01 100.0% 60.0%
4940354 886.1.1.5 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Bact_hydrolase 0.51 39.0 3.23e-01 100.0% 44.6%
3369576 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 43.0 3.16e-01 98.8% 98.4%
3602905 304.132.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in 2,3-bisphosphoglycerate-independent phosphoglycerate mutase › ferredoxin-like domain in 2,3-bisphosphoglycerate-independent phosphoglycerate mutase › PhosphMutase 0.50 45.0 3.62e-01 100.0% 96.1%