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NC_031028.1__YP_009281132.1__KCH37_gp29__00029

Bact-Vir

NC_031028.1__YP_009281132.1__KCH37_gp29__00029

Identity

Accession:
NC_031028 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ghobesvirus› Gordonia_phage_Ghobes

TaxID: 1887647

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 192-256
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08708.17 best PriCT_1 43.3 3.20e-11 96.9% 89.5%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wauA01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.75 67.0 5.01e-01 98.5% 73.5%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.72 55.0 4.30e-01 83.1% 43.2%
3q9dB01 1.20.58.1050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 55.0 4.99e-01 84.6% 87.6%
1uzcA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.67 55.0 5.39e-01 90.8% 87.0%
3t5vA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 58.0 3.80e-01 100.0% 30.1%
3bhqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 51.0 3.59e-01 83.1% 39.1%
1iygA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 52.0 4.13e-01 100.0% 45.1%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.62 48.0 3.97e-01 87.7% 87.4%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.62 52.0 4.46e-01 98.5% 96.5%
3k9iA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 48.0 4.26e-01 100.0% 56.3%
1t7lB01 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.61 52.0 3.29e-01 100.0% 34.7%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.61 53.0 3.74e-01 100.0% 86.8%
1khvA05 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.60 51.0 4.59e-01 100.0% 75.3%
3gs3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 52.0 3.57e-01 100.0% 27.3%
4b94A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 48.0 3.91e-01 100.0% 44.7%
7zm7601 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.59 44.0 3.24e-01 98.5% 31.1%
4ks9A01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.57 47.0 3.96e-01 96.9% 86.5%
1ac1A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 40.0 2.94e-01 73.8% 65.4%
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 47.0 3.42e-01 100.0% 31.1%
2w3cA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 49.0 3.33e-01 100.0% 29.8%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 48.0 4.11e-01 100.0% 78.6%
3ebbA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 47.0 3.24e-01 100.0% 26.1%
1juqC00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 46.0 3.70e-01 100.0% 57.7%
1elkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 47.0 3.68e-01 100.0% 58.8%
3tt9A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 45.0 3.19e-01 95.4% 28.3%
4gpkF02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 45.0 3.19e-01 100.0% 26.2%
2lsgA00 1.20.58.1280 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain 0.55 44.0 4.07e-01 100.0% 84.5%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 47.0 4.17e-01 100.0% 64.4%
1e7uA05 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.54 44.0 3.33e-01 100.0% 62.8%
1vluA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 42.0 2.84e-01 92.3% 22.3%
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.53 39.0 3.69e-01 81.5% 68.2%
6q9jB02 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.53 39.0 3.58e-01 80.0% 68.2%
4jykA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 44.0 3.57e-01 100.0% 67.8%
1q1qA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 2.85e-01 90.8% 74.8%
2cwyA00 1.10.3450.10 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like 0.52 41.0 3.73e-01 89.2% 68.8%
1k8kG00 1.25.40.190 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 0.52 45.0 3.60e-01 100.0% 79.9%
2gnoA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.52 39.0 3.50e-01 86.2% 96.0%
7ep3A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.51 43.0 3.03e-01 100.0% 65.3%
5x2bD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.84e-01 95.4% 63.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4177876 182.1.3.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.83 75.0 6.36e-01 100.0% 65.7%
5081313 182.1.3.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.83 75.0 6.70e-01 100.0% 72.2%
3320900 109.4.1.888 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_N 0.75 67.0 5.02e-01 100.0% 42.6%
3198152 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.70 55.0 3.12e-01 100.0% 7.9%
3296365 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.70 62.0 4.58e-01 100.0% 53.5%
3783816 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.70 60.0 5.06e-01 96.9% 81.8%
3270812 109.4.1.595 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG7 0.70 59.0 3.43e-01 100.0% 22.2%
4977823 1076.1.1.1 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.67 51.0 3.45e-01 80.0% 90.0%
2073547 621.1.1.2 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 0.67 50.0 5.08e-01 84.6% 87.7%
1141950 3449.1.1.1 ↗ a+b two layers › Cpn0803 › Cpn0803 › Cpn0803 › CT_584-like 0.64 49.0 3.61e-01 83.1% 44.0%
3276654 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.64 48.0 3.14e-01 81.5% 19.3%
3730713 109.4.1.194 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_10 0.62 55.0 4.65e-01 100.0% 70.0%
3515234 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.62 54.0 4.20e-01 100.0% 55.2%
3658008 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 50.0 3.51e-01 95.4% 35.7%
3753325 109.27.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK 0.60 50.0 4.27e-01 100.0% 58.3%
3447386 109.4.1.1276 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAT, HEAT_ATR 0.59 49.0 3.35e-01 95.4% 29.4%
3281508 191.1.1.11 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_7 0.59 49.0 3.98e-01 98.5% 69.3%
3647808 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 4.27e-01 100.0% 65.2%
3226285 109.4.1.266 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG 0.58 51.0 3.71e-01 100.0% 59.5%
4271880 109.4.1.170 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CLASP_N 0.58 50.0 2.98e-01 100.0% 12.4%
5002258 109.7.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.57 45.0 4.31e-01 93.8% 75.0%
3596822 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 49.0 4.23e-01 100.0% 80.0%
3565956 109.4.1.886 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOCK 0.57 49.0 3.07e-01 100.0% 18.2%
3197663 309.1.1.4 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.57 45.0 3.33e-01 93.8% 78.5%
3199363 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 49.0 3.41e-01 100.0% 46.1%
3974483 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.56 47.0 3.64e-01 90.8% 98.6%
3355898 109.4.1.1886 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › At5g52880_ARM 0.56 49.0 3.78e-01 100.0% 50.0%
4329689 140.1.1.14 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.56 42.0 3.30e-01 84.6% 50.3%
3435020 109.4.1.1886 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › At5g52880_ARM 0.54 46.0 4.12e-01 100.0% 75.0%
3486835 524.1.1.1 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.54 39.0 3.04e-01 76.9% 76.6%
3997150 109.4.1.15 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS 0.53 44.0 3.62e-01 100.0% 70.4%
3284013 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.51 42.0 2.97e-01 98.5% 50.2%
D2 high residues 739-851
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 44.0 4.09e-01 100.0% 52.1%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.26e-01 100.0% 60.8%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 30.0 3.23e-01 85.8% 58.9%
2mgzA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 32.0 3.48e-01 83.2% 68.1%
5w0hA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 31.0 3.52e-01 85.0% 75.0%
1uv7A00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.54 32.0 3.80e-01 90.3% 88.2%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.54 25.0 3.00e-01 92.9% 62.8%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 32.0 3.52e-01 81.4% 74.4%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 29.0 3.38e-01 70.8% 77.2%
3l7oA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 32.0 3.73e-01 85.0% 94.4%
4p6qA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 29.0 3.34e-01 85.8% 77.6%
2cqiA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 30.0 3.16e-01 83.2% 63.1%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 31.0 3.41e-01 82.3% 77.9%
3hluA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 31.0 3.68e-01 71.7% 94.5%
3kkfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 31.0 3.27e-01 70.8% 66.7%
1cjwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 40.0 3.58e-01 87.6% 95.2%
2cpxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 28.0 3.25e-01 85.0% 75.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5061514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 45.0 3.76e-01 100.0% 40.5%
4342313 242.1.1.5 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.65 43.0 4.59e-01 98.2% 77.0%
5076338 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 49.0 4.14e-01 98.2% 48.6%
5076562 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 5.12e-01 94.7% 92.0%
4947850 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 5.15e-01 99.1% 91.4%
4971711 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 4.59e-01 100.0% 72.8%
4404596 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 42.0 4.02e-01 100.0% 60.0%
4948099 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 4.59e-01 100.0% 80.0%
4938000 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.60 43.0 4.58e-01 100.0% 88.4%
4325040 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.60 45.0 4.31e-01 100.0% 69.2%
4519027 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.58 31.0 3.54e-01 86.7% 68.2%
5077356 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.55e-01 100.0% 78.4%
3443063 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 45.0 3.90e-01 100.0% 53.9%
4934181 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 32.0 3.66e-01 85.0% 77.5%
3597631 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 47.0 3.70e-01 99.1% 53.1%
4943356 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.53 34.0 3.72e-01 95.6% 80.0%
3616172 304.162.1.2 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.53 29.0 3.41e-01 75.2% 76.2%
3648804 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 4.43e-01 100.0% 91.3%
3883168 101.1.2.51 ↗ alpha arrays › HTH › HTH › winged helix domain › Sec62 0.52 44.0 4.08e-01 100.0% 72.4%
357856 304.8.1.21 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.52 28.0 3.14e-01 85.8% 65.9%
3597381 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 30.0 3.14e-01 84.1% 63.0%
3767032 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 44.0 4.39e-01 100.0% 92.5%
3519677 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.51 45.0 4.26e-01 100.0% 90.0%
3482620 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 39.0 3.01e-01 81.4% 80.4%
D3 medium residues 1-73_136-160
PDB
Domain cluster: rep: GU169904.1__ACZ55506.1__X__00009__D1-68_134-173
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09250.17 best Prim-Pol 40.1 7.10e-10 58.2% 31.0%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rniA01 3.30.720.160 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Bifunctional DNA primase/polymerase, N-terminal 0.65 45.0 5.11e-01 71.4% 100.0%
1g59A03 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.51 41.0 3.90e-01 88.8% 86.2%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280020 862.1.1.3 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.87 69.0 5.53e-01 82.7% 88.0%
4984518 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.63 49.0 3.66e-01 85.7% 81.1%
3660490 2005.1.1.5 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c 0.51 41.0 3.64e-01 90.8% 68.4%
D4 medium residues 74-135_161-181
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.60 41.0 3.73e-01 72.3% 90.7%
2gffA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 3.87e-01 71.1% 90.6%
1xmbA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 40.0 3.82e-01 72.3% 87.1%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 40.0 3.77e-01 72.3% 87.1%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 40.0 3.81e-01 72.3% 88.8%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.67e-01 72.3% 86.8%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.62e-01 72.3% 88.1%
8ediA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.62e-01 74.7% 87.5%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.67e-01 72.3% 88.0%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 37.0 3.48e-01 72.3% 77.4%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.69e-01 78.3% 99.0%
2z30B00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.51 34.0 3.67e-01 71.1% 86.2%
2yvsA02 3.30.70.2560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 34.0 3.77e-01 72.3% 94.9%
1xauA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.40e-01 74.7% 83.7%
2qa1A02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 35.0 3.57e-01 72.3% 94.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280020 862.1.1.3 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.81 75.0 5.75e-01 100.0% 67.4%
3945892 862.1.1.6 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Replicase 0.62 54.0 4.45e-01 100.0% 77.4%
3528892 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.56 40.0 2.90e-01 74.7% 32.4%
3525428 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.55 39.0 3.41e-01 74.7% 66.9%
3882479 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.37e-01 74.7% 70.4%
4243242 11.1.5.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.55 39.0 3.22e-01 74.7% 81.3%
4998047 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 39.0 3.33e-01 74.7% 68.3%
3337574 11.1.5.87 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › COB_C 0.53 37.0 2.85e-01 72.3% 88.5%
3895056 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.53 37.0 3.37e-01 74.7% 78.3%
4931934 241.9.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like 0.52 35.0 3.28e-01 71.1% 55.2%
3925072 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 36.0 3.51e-01 74.7% 94.7%
D5 medium residues 257-389
PDB
Domain cluster: rep: IMGVR_UViG_3300038975_000152-3300038975-Ga0416723_08330_3207_5261__D335-454
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 30.0 4.18e-01 80.5% 87.9%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 24.0 3.08e-01 81.2% 75.0%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 33.0 3.57e-01 78.9% 74.1%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 27.0 3.43e-01 71.4% 92.9%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.50 38.0 3.89e-01 90.2% 84.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948387 1104.1.1.1 ↗ a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › DUF927 0.69 53.0 5.07e-01 83.5% 70.0%
4942589 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.63 30.0 4.10e-01 80.5% 87.1%
3798524 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.56 35.0 3.76e-01 79.7% 73.0%
3893735 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 33.0 3.60e-01 78.9% 69.6%
4034488 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 43.0 4.31e-01 82.0% 97.8%
3478366 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 33.0 3.66e-01 78.2% 75.2%
4771028 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.53 23.0 3.05e-01 81.2% 76.2%
2490256 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.53 23.0 3.01e-01 80.5% 72.7%
3562700 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 34.0 3.44e-01 80.5% 64.4%
3554073 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 33.0 3.43e-01 78.2% 66.2%
4020042 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.51 40.0 3.23e-01 82.0% 75.2%
3516660 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 34.0 3.91e-01 92.5% 95.8%
3194179 2003.1.3.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8 0.51 39.0 3.15e-01 82.0% 71.6%
5018575 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 34.0 3.59e-01 91.0% 77.4%
3783181 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 31.0 3.42e-01 78.2% 75.5%
D6 medium residues 390-446
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018480 1104.1.1.0 ↗ a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain 0.58 49.0 3.51e-01 96.5% 70.0%
D7 medium residues 447-492_608-718
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
51166 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.50 30.0 3.11e-01 91.1% 60.8%
D8 medium residues 493-607
PDB
Domain cluster: rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 70.0 5.77e-01 100.0% 57.4%
5vjhB03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 70.0 5.66e-01 100.0% 76.5%
1r6bX04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 69.0 5.70e-01 100.0% 72.6%
3vkgA07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 68.0 4.69e-01 100.0% 38.0%
3ja8204 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 68.0 4.81e-01 100.0% 42.3%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 68.0 5.70e-01 100.0% 76.7%
2bjvA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 65.0 5.86e-01 100.0% 84.3%
1g8pA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 65.0 5.40e-01 100.0% 84.4%
4r7zA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 65.0 4.69e-01 100.0% 44.0%
5m7oA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 63.0 5.60e-01 100.0% 83.4%
3m6aA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 62.0 5.70e-01 100.0% 74.0%
4akgA12 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 61.0 6.09e-01 100.0% 97.4%
5ywwA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 58.0 4.88e-01 100.0% 57.8%
8dgfB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 57.0 4.83e-01 100.0% 65.4%
3cuxA01 3.20.20.360 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Malate synthase, domain 3 0.61 53.0 3.67e-01 95.7% 47.9%
1bmtA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.61 48.0 4.40e-01 93.9% 63.3%
1zitA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 46.0 4.62e-01 99.1% 81.0%
5tx7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 42.0 4.01e-01 90.4% 63.9%
3khtA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 46.0 4.43e-01 98.3% 75.8%
1y89A00 3.40.50.1360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 46.0 3.71e-01 88.7% 99.6%
1q7zA01 3.20.20.330 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain 0.55 49.0 3.68e-01 100.0% 88.7%
1gg1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 49.0 3.54e-01 100.0% 74.6%
3gnnB02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 43.0 4.47e-01 100.0% 94.2%
3c7aA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 38.0 3.16e-01 72.2% 74.6%
1k32A05 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.54 42.0 3.55e-01 84.3% 79.1%
3no3A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.54 48.0 3.83e-01 100.0% 93.7%
2cb0A02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.52 45.0 4.14e-01 94.8% 75.7%
2g3wA00 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.52 44.0 3.86e-01 93.9% 77.1%
3hurA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.51 41.0 3.37e-01 87.8% 75.3%
3mcpA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 37.0 2.94e-01 74.8% 89.2%
3fkqA01 3.40.50.10850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ntrc-like two-domain protein. 0.51 38.0 3.83e-01 100.0% 77.6%
2ot9A01 3.10.640.10 Alpha Beta › Roll › Restriction endonuclease-like alpha-beta roll fold › Restriction endonuclease-like alpha-beta roll domain 0.50 43.0 3.75e-01 93.9% 77.3%
3sxuB00 3.40.50.10220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › DNA polymerase III, psi subunit 0.50 31.0 3.26e-01 100.0% 66.7%
ECOD (93)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931926 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.83 78.0 5.53e-01 100.0% 37.5%
3594046 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 74.0 5.60e-01 100.0% 55.8%
3481498 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.79 74.0 5.40e-01 100.0% 49.1%
5025359 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.79 73.0 5.45e-01 100.0% 53.1%
4078827 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.79 73.0 5.32e-01 100.0% 48.3%
3465917 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.79 73.0 4.74e-01 100.0% 30.2%
3476274 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.79 73.0 5.44e-01 100.0% 52.7%
None — 0.79 73.0 4.90e-01 100.0% 35.4%
None — 0.79 73.0 5.05e-01 100.0% 40.3%
3197159 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.79 73.0 4.85e-01 100.0% 34.0%
3677397 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.79 73.0 4.68e-01 100.0% 28.8%
None — 0.79 73.0 4.78e-01 100.0% 31.9%
4017535 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.79 73.0 5.21e-01 100.0% 46.0%
5012900 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.79 72.0 5.63e-01 100.0% 60.8%
3255516 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.79 73.0 5.36e-01 100.0% 50.5%
5003899 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.79 73.0 5.38e-01 100.0% 51.4%
3550992 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.79 73.0 5.47e-01 100.0% 54.3%
3594982 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.79 73.0 5.49e-01 100.0% 53.1%
4013468 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.79 73.0 5.40e-01 100.0% 52.7%
None — 0.78 72.0 5.04e-01 100.0% 41.4%
3611910 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.78 72.0 5.38e-01 100.0% 49.8%
3703312 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.78 72.0 4.90e-01 100.0% 34.9%
3695173 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.78 72.0 5.25e-01 100.0% 48.3%
None — 0.78 72.0 4.66e-01 100.0% 29.9%
None — 0.78 72.0 5.40e-01 100.0% 53.7%
4030223 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.78 72.0 5.38e-01 100.0% 53.7%
3291643 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.77 72.0 5.63e-01 100.0% 63.5%
None — 0.77 71.0 4.82e-01 100.0% 37.4%
3839782 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.77 70.0 5.33e-01 100.0% 67.3%
4926850 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.76 69.0 6.24e-01 100.0% 73.5%
3602833 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.76 69.0 5.11e-01 100.0% 50.3%
3963614 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.75 69.0 5.19e-01 100.0% 64.4%
5034518 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.75 69.0 5.57e-01 100.0% 62.3%
2810781 8001.1.1.1 ↗ alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › PPV_E1_C 0.75 70.0 5.52e-01 100.0% 52.5%
4351475 2004.1.1.624 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase, AAA_5 0.75 68.0 5.18e-01 100.0% 66.0%
4580526 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.75 68.0 5.18e-01 100.0% 66.0%
4195107 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.75 68.0 5.12e-01 100.0% 64.4%
5039660 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.75 68.0 5.02e-01 100.0% 70.2%
None — 0.75 68.0 5.42e-01 100.0% 77.8%
3945876 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.74 69.0 5.17e-01 100.0% 44.5%
3387909 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.74 67.0 5.19e-01 100.0% 60.4%
4944898 2004.1.1.1210 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_lid_2 0.74 68.0 5.19e-01 100.0% 68.6%
3166204 2004.1.1.418 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.74 68.0 5.32e-01 100.0% 65.1%
4314819 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.74 67.0 5.64e-01 100.0% 62.6%
4959586 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.74 68.0 5.06e-01 100.0% 44.1%
5022725 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 68.0 5.05e-01 100.0% 43.6%
4997974 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.74 68.0 5.50e-01 100.0% 82.9%
3281544 2004.1.1.584 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat, Mg_chelatase 0.74 67.0 5.22e-01 100.0% 70.6%
5023501 2004.1.1.58 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.74 67.0 5.12e-01 100.0% 66.5%
5048100 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.73 67.0 5.14e-01 100.0% 68.6%
3604643 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.73 66.0 5.06e-01 100.0% 54.7%
3968336 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 66.0 4.80e-01 100.0% 45.6%
4998586 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 67.0 5.41e-01 100.0% 54.3%
5081314 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 67.0 5.11e-01 100.0% 45.8%
4264453 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.73 66.0 5.50e-01 100.0% 72.5%
5029777 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.73 67.0 5.12e-01 100.0% 47.1%
3390911 138.1.1.13 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › AAA 0.73 67.0 4.76e-01 100.0% 39.1%
5022020 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.73 67.0 5.06e-01 100.0% 47.2%
4009589 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.73 66.0 5.48e-01 100.0% 74.0%
5011495 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 67.0 5.51e-01 100.0% 59.0%
3968271 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.73 66.0 5.39e-01 100.0% 64.8%
3469175 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 65.0 5.19e-01 100.0% 71.7%
5063952 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.72 66.0 5.00e-01 100.0% 53.8%
4971994 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.72 65.0 5.04e-01 100.0% 70.0%
4542391 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 65.0 5.02e-01 100.0% 51.2%
3954608 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.71 65.0 4.94e-01 100.0% 47.3%
3253892 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.70 63.0 5.29e-01 100.0% 57.9%
3610966 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 63.0 4.78e-01 100.0% 53.2%
2704206 2004.1.1.57 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Parvo_NS1 0.70 64.0 4.82e-01 100.0% 43.8%
4971317 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.70 63.0 5.17e-01 100.0% 81.4%
3575760 2004.1.1.183 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_9 0.70 65.0 5.57e-01 100.0% 65.7%
3669453 2004.1.1.153 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 0.70 63.0 4.99e-01 100.0% 68.9%
3718987 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 64.0 5.31e-01 100.0% 67.2%
3693345 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 63.0 4.75e-01 100.0% 67.6%
4033843 2004.1.1.313 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › VapE-like_dom 0.68 61.0 5.14e-01 100.0% 57.9%
4932834 2004.1.1.176 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.67 52.0 4.33e-01 83.5% 94.1%
1312358 2004.1.1.183 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_9 0.67 61.0 5.53e-01 100.0% 75.0%
3256248 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.67 48.0 4.54e-01 87.0% 62.1%
4944188 2004.1.1.176 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.66 50.0 4.23e-01 80.0% 100.0%
4948046 2004.1.1.1203 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RMMBL 0.66 51.0 4.33e-01 81.7% 100.0%
4975660 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.66 51.0 3.32e-01 81.7% 39.8%
3824840 2004.1.1.56 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.64 59.0 4.61e-01 100.0% 51.7%
3653298 2004.1.1.46 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.64 57.0 4.78e-01 97.4% 58.4%
3451932 2004.1.1.56 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.61 57.0 4.99e-01 100.0% 78.8%
3455669 2004.1.1.56 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.61 56.0 4.75e-01 100.0% 87.6%
1160725 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 28.0 3.76e-01 85.2% 86.0%
4937547 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.59 44.0 4.50e-01 89.6% 80.9%
3238640 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 49.0 3.93e-01 94.8% 60.0%
4224930 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 49.0 3.97e-01 94.8% 61.8%
3505423 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.56 46.0 4.53e-01 90.4% 88.8%
4180338 7529.1.1.3 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Peptidase_M17_N 0.52 44.0 4.01e-01 95.7% 98.8%
4640683 2007.6.1.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.51 43.0 3.79e-01 94.8% 65.6%
3583467 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 44.0 3.27e-01 99.1% 35.3%