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NC_031040.1__YP_009283231.1__BI030_gp35__00035

Bact-Vir

NC_031040.1__YP_009283231.1__BI030_gp35__00035

Identity

Accession:
NC_031040 ↗
Kingdom:
phage

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactococcus_phage_50101

TaxID: 1871681

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-32
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3362993 375.1.1.51 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.65 47.0 4.67e-01 100.0% 92.5%
D2 medium residues 66-97
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6aqgD02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.85 68.0 3.90e-01 100.0% 9.6%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.80 65.0 5.62e-01 100.0% 60.0%
2dk4A00 4.10.280.110 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Pre-mRNA processing factor 4 domain 0.75 59.0 4.69e-01 100.0% 44.7%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.70 48.0 4.23e-01 78.1% 47.9%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.69 51.0 4.02e-01 100.0% 65.2%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 54.0 4.15e-01 100.0% 53.9%
3u48A02 3.40.50.1700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain 0.51 40.0 2.48e-01 96.9% 54.8%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.51 44.0 3.72e-01 100.0% 58.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3172901 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.96 85.0 8.26e-01 96.9% 88.6%
3714674 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.93 82.0 6.79e-01 100.0% 58.2%
3191284 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.92 82.0 7.02e-01 100.0% 64.0%
3249598 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.92 80.0 6.18e-01 100.0% 45.7%
3739606 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.91 77.0 5.78e-01 100.0% 40.0%
3881355 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.90 77.0 6.70e-01 100.0% 64.0%
3254598 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.88 74.0 5.81e-01 100.0% 45.7%
4959048 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.88 74.0 6.49e-01 100.0% 64.0%
3208160 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.87 75.0 6.49e-01 100.0% 64.0%
4428371 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.85 69.0 6.35e-01 100.0% 71.1%
3943133 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 68.0 6.28e-01 100.0% 71.1%
3934734 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 66.0 6.18e-01 100.0% 71.1%
3507079 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 69.0 6.56e-01 100.0% 80.0%
1141937 105.2.1.1 ↗ alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C › LRIM1_dimer 0.82 66.0 4.33e-01 100.0% 21.5%
3127 130.1.1.7 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Endonuc-dimeris 0.80 65.0 5.66e-01 100.0% 61.1%
4974358 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.79 63.0 4.55e-01 100.0% 31.4%
3291724 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.70 54.0 4.17e-01 100.0% 35.6%
4947024 4993.1.1.0 ↗ extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.63 49.0 3.58e-01 90.6% 31.6%