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NC_031043.1__YP_009283517.1__BIZ79_gp028__00028
Bact-VirNC_031043.1__YP_009283517.1__BIZ79_gp028__00028
Identity
- Accession:
- NC_031043 ↗
- Kingdom:
- phage
Quality
58.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Derbicusvirus›
Erwinia_phage_vB_EamM_Phobos
TaxID: 1883377
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-104
Domain cluster:
rep: MW735835.1__QTH80352.1__PA10_00152__00152__D18-84
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2inbA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.57 | 42.0 | 3.64e-01 | 75.9% | 69.5% |
| 3i8nB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 42.0 | 3.73e-01 | 85.1% | 69.0% |
| 4da2A02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 38.0 | 3.26e-01 | 78.2% | 59.9% |
| 2p67A03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.52 | 31.0 | 3.46e-01 | 100.0% | 78.5% |
| 1i74A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.52 | 36.0 | 3.31e-01 | 79.3% | 52.9% |
| 2qb7B02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.52 | 38.0 | 3.30e-01 | 78.2% | 49.3% |
| 3npdA00 | 3.30.300.250 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.51 | 44.0 | 4.07e-01 | 97.7% | 97.3% |
| 2yjgA02 | 3.40.50.11440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain | 0.51 | 39.0 | 2.93e-01 | 83.9% | 87.6% |
| 2dbsA00 | 3.40.1350.20 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.50 | 33.0 | 3.41e-01 | 79.3% | 72.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 119502 | 3148.1.1.1 ↗ | a+b two layers › putative secreted protein PA3611 › putative secreted protein PA3611 › putative secreted protein PA3611 › QSregVF | 0.52 | 43.0 | 4.01e-01 | 93.1% | 96.4% |
| 3393164 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.51 | 41.0 | 2.78e-01 | 90.8% | 96.9% |
| 5037760 | 7528.1.1.0 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains | 0.51 | 36.0 | 3.10e-01 | 74.7% | 71.7% |
| 3753267 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.51 | 38.0 | 2.46e-01 | 79.3% | 73.3% |
| 865573 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.51 | 43.0 | 3.62e-01 | 94.3% | 62.7% |
D2
medium
residues 106-179