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NC_031043.1__YP_009283517.1__BIZ79_gp028__00028

Bact-Vir

NC_031043.1__YP_009283517.1__BIZ79_gp028__00028

Identity

Accession:
NC_031043 ↗
Kingdom:
phage

Quality

58.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-104
PDB
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2inbA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 42.0 3.64e-01 75.9% 69.5%
3i8nB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 42.0 3.73e-01 85.1% 69.0%
4da2A02 3.40.1350.60 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 38.0 3.26e-01 78.2% 59.9%
2p67A03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.52 31.0 3.46e-01 100.0% 78.5%
1i74A02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.52 36.0 3.31e-01 79.3% 52.9%
2qb7B02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.52 38.0 3.30e-01 78.2% 49.3%
3npdA00 3.30.300.250 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 44.0 4.07e-01 97.7% 97.3%
2yjgA02 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.51 39.0 2.93e-01 83.9% 87.6%
2dbsA00 3.40.1350.20 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.50 33.0 3.41e-01 79.3% 72.5%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
119502 3148.1.1.1 a+b two layers › putative secreted protein PA3611 › putative secreted protein PA3611 › putative secreted protein PA3611 › QSregVF 0.52 43.0 4.01e-01 93.1% 96.4%
3393164 2008.1.1.91 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C 0.51 41.0 2.78e-01 90.8% 96.9%
5037760 7528.1.1.0 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.51 36.0 3.10e-01 74.7% 71.7%
3753267 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.51 38.0 2.46e-01 79.3% 73.3%
865573 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.51 43.0 3.62e-01 94.3% 62.7%
D2 medium residues 106-179
PDB