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NC_031043.1__YP_009283528.1__BIZ79_gp039__00039
Bact-VirNC_031043.1__YP_009283528.1__BIZ79_gp039__00039
Identity
- Accession:
- NC_031043 ↗
- Kingdom:
- phage
Quality
70.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Derbicusvirus›
Erwinia_phage_vB_EamM_Phobos
TaxID: 1883377
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-83
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.67 | 40.0 | 3.02e-01 | 81.0% | 24.4% |
| 3hslX00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.58 | 44.0 | 3.05e-01 | 82.3% | 37.6% |
| 2j7qA00 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.58 | 52.0 | 3.63e-01 | 96.2% | 52.8% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.57 | 43.0 | 3.05e-01 | 82.3% | 29.6% |
| 8dqwG01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.57 | 43.0 | 3.39e-01 | 82.3% | 51.4% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.57 | 43.0 | 3.69e-01 | 82.3% | 54.6% |
| 1b77A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.56 | 43.0 | 3.08e-01 | 82.3% | 40.8% |
| 1ge8A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.55 | 42.0 | 3.02e-01 | 82.3% | 30.3% |
| 2bolA03 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 40.0 | 3.85e-01 | 82.3% | 67.7% |
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.55 | 40.0 | 2.93e-01 | 81.0% | 38.0% |
| 2qv8A00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.54 | 41.0 | 3.40e-01 | 81.0% | 60.4% |
| 1jqlA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.54 | 43.0 | 3.79e-01 | 87.3% | 58.0% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.54 | 42.0 | 3.22e-01 | 87.3% | 47.7% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 42.0 | 3.71e-01 | 87.3% | 58.0% |
| 5aguA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 42.0 | 3.65e-01 | 87.3% | 55.6% |
| 1smpI00 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 38.0 | 3.59e-01 | 78.5% | 96.0% |
| 1b1eA00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.52 | 43.0 | 3.77e-01 | 92.4% | 88.6% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.51 | 40.0 | 3.64e-01 | 87.3% | 81.4% |
| 3rlfF03 | 2.40.430.10 | Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP | 0.51 | 36.0 | 3.50e-01 | 74.7% | 94.3% |
| 3wpwA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.50 | 40.0 | 3.38e-01 | 92.4% | 65.8% |
| 2vq9A00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.50 | 43.0 | 3.76e-01 | 96.2% | 87.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4073606 | 3703.1.1.0 ↗ | a/b three-layered sandwiches › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain | 0.64 | 47.0 | 3.41e-01 | 89.9% | 27.4% |
| 3735005 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.62 | 52.0 | 3.80e-01 | 94.9% | 40.4% |
| 4995744 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.62 | 49.0 | 4.28e-01 | 87.3% | 74.0% |
| 3613685 | 227.1.1.17 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N | 0.60 | 44.0 | 3.66e-01 | 78.5% | 59.3% |
| 3586034 | 274.1.1.38 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pecanex_C | 0.59 | 51.0 | 3.69e-01 | 94.9% | 79.1% |
| 3256903 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.59 | 44.0 | 3.77e-01 | 82.3% | 57.8% |
| 3408147 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 49.0 | 3.45e-01 | 92.4% | 40.4% |
| 3480669 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.58 | 43.0 | 3.64e-01 | 82.3% | 76.9% |
| 3798355 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.57 | 43.0 | 3.66e-01 | 82.3% | 55.7% |
| 4365971 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.57 | 43.0 | 3.61e-01 | 81.0% | 66.4% |
| 3760926 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.57 | 43.0 | 3.65e-01 | 82.3% | 57.6% |
| 3598259 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.57 | 43.0 | 3.73e-01 | 84.8% | 60.7% |
| 3973416 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 49.0 | 3.24e-01 | 100.0% | 49.2% |
| 3719938 | 227.1.1.17 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_N | 0.57 | 42.0 | 3.52e-01 | 79.7% | 60.7% |
| 2834343 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.57 | 43.0 | 3.34e-01 | 82.3% | 49.5% |
| 3592374 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 48.0 | 3.29e-01 | 97.5% | 62.0% |
| 3244230 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.56 | 42.0 | 3.48e-01 | 82.3% | 74.7% |
| 3412152 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.56 | 42.0 | 3.60e-01 | 82.3% | 57.8% |
| 4026069 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.56 | 42.0 | 3.57e-01 | 82.3% | 52.6% |
| 3507498 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.56 | 42.0 | 3.48e-01 | 82.3% | 75.3% |
| 3608102 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 39.0 | 4.09e-01 | 98.7% | 82.9% |
| 4466445 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.55 | 41.0 | 3.36e-01 | 81.0% | 63.9% |
| 3831707 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.55 | 46.0 | 3.12e-01 | 100.0% | 56.6% |
| 5979 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.53 | 42.0 | 3.67e-01 | 87.3% | 56.9% |
| 3511109 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.52 | 37.0 | 3.72e-01 | 81.0% | 71.8% |
| 3596476 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.52 | 40.0 | 3.33e-01 | 83.5% | 64.3% |
| 4500973 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.52 | 41.0 | 3.61e-01 | 87.3% | 56.9% |
| 3468658 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 44.0 | 3.05e-01 | 100.0% | 39.3% |
| 3472421 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 43.0 | 3.71e-01 | 98.7% | 95.4% |
| 4028633 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.50 | 43.0 | 2.89e-01 | 93.7% | 31.0% |