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NC_031043.1__YP_009283633.1__BIZ79_gp144__00144
Bact-VirNC_031043.1__YP_009283633.1__BIZ79_gp144__00144
Identity
- Accession:
- NC_031043 ↗
- Kingdom:
- phage
Quality
67.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Derbicusvirus›
Erwinia_phage_vB_EamM_Phobos
TaxID: 1883377
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-73
Domain cluster:
rep: LR881104.1__CAD5236217.1__LLCLJKAH_00228__00228__D12-71
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25613.2 best | DUF7941 | 50.3 | 3.20e-13 | 100.0% | 24.1% |
D2
high
residues 74-160
Domain cluster:
rep: LC667451.1__BDD79839.1__X__00320__D73-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25613.2 best | DUF7941 | 30.9 | 2.70e-07 | 100.0% | 29.5% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lxmA04 | 2.60.40.1380 | Mainly Beta › Sandwich › Immunoglobulin-like › E set domains; domain 4 | 0.57 | 41.0 | 4.34e-01 | 85.1% | 86.8% |
| 4kc3B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 4.51e-01 | 92.0% | 100.0% |
| 4fajA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 45.0 | 3.66e-01 | 89.7% | 58.4% |
| 7jrmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 42.0 | 4.49e-01 | 93.1% | 98.6% |
| 3o4oC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 45.0 | 4.25e-01 | 92.0% | 99.1% |
| 2pkdA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 4.02e-01 | 86.2% | 100.0% |
| 4zi8B01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.54 | 44.0 | 4.18e-01 | 92.0% | 98.1% |
| 4depC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 4.29e-01 | 94.3% | 99.0% |
| 4ftdA01 | 2.60.40.2340 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 44.0 | 4.34e-01 | 93.1% | 97.9% |
| 5cyxA01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.53 | 41.0 | 4.27e-01 | 85.1% | 100.0% |
| 2wzpR02 | 3.55.50.50 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Phage tail base-plate attachment protein, domain D4 | 0.53 | 39.0 | 3.78e-01 | 79.3% | 100.0% |
| 3ubgB01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.53 | 42.0 | 4.16e-01 | 90.8% | 100.0% |
| 6vg1A01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 39.0 | 3.92e-01 | 82.8% | 100.0% |
| 5aa7A00 | 2.70.50.50 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 | 0.52 | 43.0 | 3.71e-01 | 93.1% | 77.5% |
| 3nqkA01 | 2.60.40.1740 | Mainly Beta › Sandwich › Immunoglobulin-like › hypothetical protein (bacova_03559) | 0.52 | 43.0 | 3.71e-01 | 94.3% | 97.9% |
| 1zvnA01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 39.0 | 3.87e-01 | 82.8% | 100.0% |
| 5dstA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.51 | 38.0 | 3.14e-01 | 81.6% | 80.8% |
| 1ryaA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 40.0 | 3.31e-01 | 85.1% | 75.6% |
| 7cymA04 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.51 | 39.0 | 3.80e-01 | 82.8% | 100.0% |
| 8fwpB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 36.0 | 2.69e-01 | 94.3% | 26.3% |
| 3uroR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.69e-01 | 81.6% | 93.0% |
| 1ajwA00 | 2.70.50.30 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › Coagulation Factor XIII, subunit A, domain 1 | 0.51 | 43.0 | 3.66e-01 | 95.4% | 77.9% |
| 4m8mA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 44.0 | 3.99e-01 | 97.7% | 88.2% |
| 1m56B02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.50 | 41.0 | 3.49e-01 | 93.1% | 73.9% |
| 4ys4A02 | 2.60.40.2860 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.75e-01 | 95.4% | 81.4% |
| 4ikcA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.50 | 38.0 | 2.71e-01 | 95.4% | 25.9% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3494348 | 11.1.1.110 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_2 | 0.56 | 43.0 | 3.85e-01 | 83.9% | 99.2% |
| 4608202 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.55 | 48.0 | 4.58e-01 | 98.9% | 81.0% |
| 3883578 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.55 | 45.0 | 4.38e-01 | 89.7% | 100.0% |
| 3769534 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 43.0 | 4.25e-01 | 87.4% | 96.8% |
| 3251290 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 43.0 | 3.99e-01 | 85.1% | 83.6% |
| 1103284 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.54 | 42.0 | 4.15e-01 | 85.1% | 100.0% |
| 3749461 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 3.81e-01 | 95.4% | 68.7% |
| 3406860 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.53 | 45.0 | 4.10e-01 | 96.6% | 95.8% |
| 3851505 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.53 | 42.0 | 4.16e-01 | 88.5% | 95.8% |
| 3229913 | 11.1.1.628 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sarcoglycan_2 | 0.53 | 41.0 | 4.04e-01 | 85.1% | 98.9% |
| 3990549 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 42.0 | 4.06e-01 | 87.4% | 96.0% |
| 3397042 | 3698.1.1.2 ↗ | beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C | 0.52 | 40.0 | 3.30e-01 | 85.1% | 82.3% |
| 3237842 | 11.1.1.624 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMEM131L_5 | 0.52 | 46.0 | 3.91e-01 | 100.0% | 96.6% |
| 3845690 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 45.0 | 4.01e-01 | 100.0% | 94.6% |
| 3751155 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.52 | 41.0 | 3.86e-01 | 88.5% | 98.2% |
| 3561323 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.52 | 44.0 | 4.06e-01 | 96.6% | 91.3% |
| 3510120 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.55e-01 | 93.1% | 63.1% |
| 3748270 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 4.04e-01 | 93.1% | 100.0% |
| 3700819 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 41.0 | 3.26e-01 | 88.5% | 52.4% |
| 3407425 | 11.1.1.999 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28393 | 0.51 | 42.0 | 3.96e-01 | 94.3% | 93.6% |
| 3911811 | 11.1.1.243 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › RET_CLD4 | 0.51 | 44.0 | 3.78e-01 | 100.0% | 99.3% |
| 3927745 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 43.0 | 4.18e-01 | 94.3% | 95.0% |
| 3551842 | 11.1.1.115 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_pro | 0.51 | 41.0 | 3.99e-01 | 88.5% | 90.5% |
| 3998309 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.51 | 40.0 | 3.91e-01 | 88.5% | 97.0% |
| 3582007 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.95e-01 | 86.2% | 98.9% |
| 3219750 | 11.1.1.853 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28399 | 0.51 | 43.0 | 3.95e-01 | 96.6% | 88.7% |
| 3867075 | 3569.2.1.3 ↗ | extended segments › Epidermal growth factor receptor transmembrane-juxtamembrane segment-like › Insulin receptor transmembrane segment › Insulin receptor transmembrane segment › Cadherin_3 | 0.51 | 41.0 | 2.90e-01 | 89.7% | 40.7% |
| 3896308 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.51 | 43.0 | 3.97e-01 | 97.7% | 97.4% |
| 3475486 | 2004.1.1.132 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DLIC | 0.50 | 43.0 | 3.05e-01 | 98.9% | 32.0% |
| 3930069 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.50 | 43.0 | 2.55e-01 | 96.6% | 14.1% |
| 3415379 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.50 | 41.0 | 3.77e-01 | 90.8% | 94.8% |
| 3928381 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 44.0 | 4.21e-01 | 97.7% | 98.0% |
| 3242982 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 42.0 | 4.04e-01 | 95.4% | 93.3% |
| 3525593 | 11.1.1.115 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_pro | 0.50 | 41.0 | 3.88e-01 | 93.1% | 81.8% |
D3
high
residues 183-279
D4
high
residues 290-433