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NC_031043.1__YP_009283682.1__BIZ79_gp193__00193

Bact-Vir

NC_031043.1__YP_009283682.1__BIZ79_gp193__00193

Identity

Accession:
NC_031043 ↗
Kingdom:
phage

Quality

90.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Derbicusvirus› Erwinia_phage_vB_EamM_Phobos

TaxID: 1883377

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-71
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.73 62.0 5.18e-01 94.4% 83.6%
7ae2A01 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.68 59.0 4.86e-01 100.0% 78.8%
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.66 51.0 4.79e-01 83.1% 67.0%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.62 50.0 4.66e-01 88.7% 85.4%
1qdmA03 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 33.0 3.26e-01 95.8% 48.1%
3bulA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.60 40.0 3.81e-01 80.3% 57.5%
2efeA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.59 40.0 3.90e-01 85.9% 61.7%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.59 41.0 4.26e-01 76.1% 81.2%
3qx3A04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.57 43.0 3.82e-01 80.3% 63.0%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.57 40.0 3.62e-01 73.2% 66.3%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.55 35.0 3.39e-01 71.8% 54.9%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 44.0 4.51e-01 100.0% 95.6%
2fh0A00 1.10.8.140 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain 0.52 36.0 3.45e-01 77.5% 61.7%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.52 39.0 3.80e-01 84.5% 72.8%
3t57A02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.52 34.0 3.36e-01 71.8% 62.7%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3986190 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.66 52.0 4.81e-01 88.7% 66.7%
4934193 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.64 47.0 3.67e-01 78.9% 64.4%
3634546 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.64 51.0 5.09e-01 88.7% 90.7%
3653791 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.59 44.0 4.39e-01 80.3% 89.3%
3517599 375.1.9.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.59 46.0 3.73e-01 83.1% 88.5%
3928004 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.59 47.0 4.43e-01 91.5% 84.4%
3625144 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 37.0 3.82e-01 71.8% 70.0%
3335320 5054.1.1.1 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan 0.56 45.0 4.22e-01 100.0% 71.1%
3254740 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.55 45.0 3.36e-01 93.0% 86.2%
D2 medium residues 72-158
PDB
Domain cluster: rep: NC_042056.1__YP_009617126.1__FDI85_gp075__00200__D81-163
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r31A01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.55 23.0 2.62e-01 94.3% 48.5%
2r15A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.23e-01 95.4% 52.3%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 34.0 3.71e-01 90.8% 84.8%
2fmlB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 32.0 3.54e-01 90.8% 84.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3491348 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.76e-01 93.1% 74.1%
3279868 2486.1.1.1 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 0.51 42.0 3.00e-01 97.7% 99.0%
3473498 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 36.0 3.68e-01 95.4% 78.8%
5082051 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 37.0 3.66e-01 95.4% 74.4%
5024784 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.50 33.0 3.40e-01 93.1% 71.2%
4622104 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 32.0 3.27e-01 92.0% 63.3%
3736265 109.4.1.862 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZW10_C2 0.50 42.0 2.60e-01 97.7% 14.2%