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NC_031043.1__YP_009283690.1__BIZ79_gp201__00201

Bact-Vir

NC_031043.1__YP_009283690.1__BIZ79_gp201__00201

Identity

Accession:
NC_031043 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Derbicusvirus› Erwinia_phage_vB_EamM_Phobos

TaxID: 1883377

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-152
PDB
Domain cluster: rep: NC_048016.1__YP_009806718.1__HOT70_gp067__00226__D2-143
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hqcA01 1.20.1640.10 Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain 0.66 57.0 5.22e-01 98.7% 70.8%
1cpcB00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.63 46.0 4.44e-01 93.4% 66.3%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 30.0 3.55e-01 74.8% 66.0%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 40.0 4.39e-01 100.0% 84.6%
2zy9A03 1.10.357.20 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain 0.59 50.0 4.82e-01 94.0% 80.5%
6e1kA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 40.0 4.48e-01 100.0% 94.6%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.57 34.0 4.01e-01 100.0% 88.0%
3pmcA00 1.10.490.70 Mainly Alpha › Orthogonal Bundle › Globin-like › Histidine kinase N-terminal domain 0.57 39.0 4.11e-01 90.7% 78.8%
3zdqA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.56 41.0 3.15e-01 75.5% 82.0%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 32.0 4.17e-01 81.5% 97.7%
3w3aG00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 35.0 3.15e-01 71.5% 46.2%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 34.0 3.94e-01 98.0% 93.2%
4h33A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 31.0 3.77e-01 96.7% 93.4%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.53 42.0 4.25e-01 85.4% 92.2%
6pnjL00 1.20.1240.10 Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI 0.52 39.0 3.95e-01 82.1% 75.6%
7lb8B01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.51 40.0 3.08e-01 80.1% 92.4%
3ggyA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.50 35.0 3.32e-01 70.9% 94.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3600865 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.60 33.0 3.17e-01 99.3% 44.1%
3399198 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.60 40.0 3.97e-01 100.0% 65.2%
3407357 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.59 40.0 3.93e-01 100.0% 63.1%
3249832 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.58 42.0 3.81e-01 73.5% 89.5%
4945946 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 35.0 3.28e-01 88.7% 47.2%
4218247 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 41.0 3.70e-01 75.5% 79.8%
4960723 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.55 39.0 3.58e-01 74.2% 83.9%
4541769 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.54 43.0 3.90e-01 84.8% 87.8%
4965007 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.53 38.0 3.50e-01 73.5% 85.8%
5071393 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.53 38.0 3.82e-01 82.1% 73.3%
3699448 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.52 33.0 3.28e-01 97.4% 57.0%
3978383 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.51 41.0 3.89e-01 86.1% 82.7%
3415933 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.51 29.0 2.96e-01 96.0% 53.3%
3993034 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 37.0 4.01e-01 96.7% 92.0%
5050456 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.51 45.0 3.59e-01 96.7% 84.9%
D2 high residues 167-257
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7tn8A01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 42.0 3.49e-01 79.1% 64.9%
4xttA00 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.52 37.0 3.84e-01 74.7% 87.1%
2gh8A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 36.0 2.84e-01 72.5% 54.5%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 36.0 3.29e-01 73.6% 94.5%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 34.0 3.43e-01 71.4% 65.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4978979 3325.1.1.0 ↗ a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA 0.61 41.0 3.69e-01 71.4% 48.5%
5019984 12.1.1.114 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 0.60 41.0 4.07e-01 70.3% 95.8%
5069075 4261.1.1.1 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.56 40.0 4.01e-01 75.8% 83.9%
4951628 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 44.0 4.03e-01 86.8% 100.0%
4036615 331.7.1.1 ↗ a+b two layers › TBP-like › Cell-division protein ZipA, C-terminal domain › Cell-division protein ZipA, C-terminal domain › ZipA_C 0.53 36.0 3.21e-01 71.4% 59.3%
4514001 331.7.1.1 ↗ a+b two layers › TBP-like › Cell-division protein ZipA, C-terminal domain › Cell-division protein ZipA, C-terminal domain › ZipA_C 0.52 37.0 3.32e-01 74.7% 64.9%
4024758 304.8.1.99 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26946 0.50 33.0 3.64e-01 73.6% 87.1%