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NC_031050.1__YP_009284701.1__BI040_gp35__00077

Bact-Vir

NC_031050.1__YP_009284701.1__BI040_gp35__00077

Identity

Accession:
NC_031050 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Vilniusvirus› Escherichia_phage_vB_EcoS_NBD2

TaxID: 1852563

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
Domain cluster: rep: OR525700.1__WQN06765.1__X__00075__D2-66
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 47.0 5.12e-01 100.0% 93.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 46.0 4.76e-01 100.0% 85.9%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 46.0 3.84e-01 100.0% 47.1%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 46.0 4.78e-01 100.0% 90.9%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 39.0 3.57e-01 78.6% 50.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 45.0 4.64e-01 100.0% 89.4%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 46.0 4.72e-01 100.0% 91.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 4.21e-01 100.0% 79.4%
1y0gA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.55 47.0 3.67e-01 100.0% 96.4%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.55 44.0 3.72e-01 91.4% 82.8%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.66e-01 98.6% 68.2%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.67e-01 97.1% 72.5%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 44.0 3.74e-01 90.0% 72.7%
3nhqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 45.0 3.85e-01 92.9% 68.9%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.54 46.0 3.24e-01 100.0% 88.4%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.54 45.0 4.07e-01 100.0% 91.5%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.59e-01 91.4% 82.0%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 4.16e-01 95.7% 98.9%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.56e-01 97.1% 66.9%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 42.0 2.92e-01 91.4% 35.5%
6dq2A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 39.0 2.74e-01 82.9% 61.2%
1k07A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 39.0 2.72e-01 82.9% 62.2%
2jozA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 4.13e-01 100.0% 100.0%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 39.0 3.51e-01 84.3% 78.7%
4awyB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 40.0 2.74e-01 85.7% 60.0%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 35.0 3.50e-01 85.7% 68.9%
3v0aB04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 40.0 3.28e-01 92.9% 97.4%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.67e-01 82.9% 94.8%
5wcmA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 38.0 2.69e-01 84.3% 61.6%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.24e-01 88.6% 43.6%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.51 33.0 3.55e-01 71.4% 78.7%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.39e-01 81.4% 100.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4086268 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 43.0 3.97e-01 95.7% 58.9%
3890893 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 43.0 4.73e-01 97.1% 100.0%
3398298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 42.0 4.07e-01 97.1% 68.8%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 43.0 4.69e-01 100.0% 98.3%
682 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 36.0 3.33e-01 100.0% 49.5%
4939703 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.55 41.0 2.98e-01 82.9% 74.1%
5056878 5.1.2.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.55 45.0 2.91e-01 91.4% 28.8%
3228051 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.55 36.0 3.74e-01 70.0% 72.3%
3294025 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 39.0 4.29e-01 85.7% 98.2%
17 1.1.1.5 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease 0.54 44.0 3.67e-01 90.0% 71.4%
3710561 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 43.0 4.50e-01 100.0% 93.8%
3364063 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.53 41.0 3.40e-01 87.1% 77.9%
3573862 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 3.33e-01 100.0% 41.0%
4139943 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.52 44.0 3.52e-01 100.0% 66.5%
4939755 5.1.2.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.52 44.0 2.87e-01 100.0% 77.0%
3887624 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 39.0 3.06e-01 84.3% 53.1%
3401352 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 43.0 3.68e-01 100.0% 84.2%
3483806 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.50 38.0 3.08e-01 85.7% 84.7%