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NC_031053.1__YP_009284923.1__BI015_gp59__00059

Bact-Vir

NC_031053.1__YP_009284923.1__BI015_gp59__00059

Identity

Accession:
NC_031053 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 693-825
PDB
D2 medium residues 279-331
PDB
Domain cluster: representative
CATH (67)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.74 64.0 5.19e-01 100.0% 51.0%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.74 63.0 6.24e-01 100.0% 92.9%
1ayaA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.74 64.0 5.23e-01 100.0% 69.3%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.73 63.0 4.81e-01 100.0% 57.1%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.72 63.0 5.15e-01 100.0% 69.0%
2dx0A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.72 63.0 4.91e-01 100.0% 68.4%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.72 60.0 4.88e-01 98.1% 71.3%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.72 62.0 5.03e-01 100.0% 58.3%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.71 61.0 5.04e-01 100.0% 76.0%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.71 60.0 4.94e-01 100.0% 52.9%
1m61A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.71 60.0 4.92e-01 100.0% 69.2%
1nrvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.71 60.0 4.98e-01 100.0% 71.0%
1rjaA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.70 58.0 4.89e-01 100.0% 72.0%
3us4A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.70 59.0 4.96e-01 100.0% 71.1%
1rpyB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 59.0 5.14e-01 100.0% 67.4%
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 59.0 5.13e-01 100.0% 83.3%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 58.0 4.66e-01 100.0% 67.3%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 57.0 5.02e-01 100.0% 68.6%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 59.0 4.86e-01 100.0% 73.7%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 58.0 4.17e-01 100.0% 44.8%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 58.0 4.74e-01 100.0% 63.5%
2dvjA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 58.0 4.31e-01 100.0% 59.7%
1nxzA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.68 57.0 5.25e-01 100.0% 97.2%
3q41B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 60.0 4.11e-01 100.0% 42.0%
2crhA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 58.0 4.74e-01 100.0% 67.6%
1xa6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 56.0 4.64e-01 100.0% 62.5%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 54.0 4.48e-01 100.0% 50.5%
2dyuA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.66 55.0 3.53e-01 100.0% 43.2%
3venA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 51.0 3.46e-01 92.5% 21.1%
2eobA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 54.0 4.38e-01 100.0% 61.1%
3hutA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 53.0 3.83e-01 92.5% 46.7%
1xubA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.63 53.0 3.96e-01 98.1% 52.0%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 52.0 4.39e-01 100.0% 64.0%
3td9A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 55.0 3.96e-01 100.0% 45.0%
2kksA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.62 51.0 3.87e-01 100.0% 76.0%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.62 50.0 3.91e-01 100.0% 75.0%
1u0kA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.61 49.0 3.66e-01 94.3% 45.7%
2bbuA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 49.0 3.71e-01 100.0% 48.7%
3ednA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 49.0 3.84e-01 100.0% 76.1%
3pieC01 3.40.50.12390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 48.0 3.10e-01 92.5% 88.0%
2gk4A00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.60 49.0 3.33e-01 98.1% 24.9%
2rlpA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.60 47.0 4.40e-01 88.7% 80.6%
6j7cA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 49.0 3.62e-01 100.0% 68.7%
4evqA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 52.0 3.76e-01 100.0% 42.4%
3lnbA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.58 41.0 2.76e-01 100.0% 16.7%
5xilA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.58 48.0 3.77e-01 100.0% 71.1%
1qyaB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 46.0 3.61e-01 100.0% 64.6%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.58 45.0 3.47e-01 92.5% 53.2%
1s7jA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 46.0 3.65e-01 100.0% 59.1%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 41.0 3.44e-01 81.1% 50.0%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.57 43.0 3.80e-01 96.2% 53.8%
2vhhA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.56 46.0 2.89e-01 98.1% 26.7%
1r3fA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.55 45.0 4.33e-01 98.1% 89.2%
1xezA01 3.30.110.130 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain 0.55 45.0 4.06e-01 100.0% 96.3%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.54 37.0 3.22e-01 75.5% 89.0%
3looB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 42.0 2.84e-01 100.0% 47.5%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 39.0 3.27e-01 90.6% 41.4%
3tavA00 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.53 42.0 2.76e-01 92.5% 82.2%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.41e-01 90.6% 53.4%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 2.98e-01 100.0% 27.8%
1sp8C01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 39.0 2.83e-01 83.0% 90.9%
5n70A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 43.0 3.18e-01 98.1% 82.6%
1cpyA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 2.67e-01 100.0% 40.4%
3ieyA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 37.0 3.17e-01 83.0% 71.0%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.49e-01 100.0% 95.6%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.51 40.0 2.66e-01 100.0% 43.0%
3g1pA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 42.0 2.82e-01 100.0% 33.7%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947985 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.99 95.0 8.46e-01 100.0% 80.0%
3213147 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.76 67.0 5.18e-01 100.0% 66.1%
3514123 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.75 66.0 5.04e-01 100.0% 72.8%
3843531 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.75 65.0 5.35e-01 100.0% 72.0%
3795991 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.75 65.0 5.25e-01 100.0% 68.6%
3801699 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.75 65.0 5.17e-01 100.0% 62.7%
3768377 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.75 66.0 5.05e-01 100.0% 44.2%
4871885 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.74 64.0 5.25e-01 100.0% 69.3%
3926352 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.74 65.0 5.06e-01 100.0% 61.7%
3518621 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.74 65.0 4.94e-01 100.0% 68.8%
3553532 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.74 63.0 4.98e-01 100.0% 62.6%
4602126 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.73 63.0 5.04e-01 100.0% 48.2%
3509371 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.73 63.0 4.98e-01 100.0% 68.7%
3912111 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.73 63.0 4.96e-01 100.0% 66.1%
3750819 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.73 62.0 4.70e-01 100.0% 59.0%
3415161 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.72 63.0 3.98e-01 100.0% 27.6%
4550200 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 62.0 4.98e-01 100.0% 50.0%
3871935 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 62.0 4.69e-01 100.0% 54.1%
2987316 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 62.0 4.81e-01 100.0% 57.9%
2807015 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 61.0 4.85e-01 100.0% 63.2%
3628065 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.72 62.0 4.43e-01 100.0% 45.0%
3213146 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 62.0 4.94e-01 100.0% 65.5%
4044230 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 62.0 4.29e-01 100.0% 42.2%
3796066 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 61.0 4.65e-01 100.0% 53.1%
3253803 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 61.0 5.21e-01 100.0% 74.4%
3766764 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.71 61.0 3.86e-01 100.0% 26.7%
3542444 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 61.0 4.43e-01 100.0% 49.0%
3474737 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 61.0 4.44e-01 100.0% 46.5%
4079647 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 61.0 5.04e-01 100.0% 72.0%
3472650 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 62.0 4.68e-01 100.0% 55.4%
3793075 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 61.0 4.60e-01 100.0% 53.3%
3512674 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 61.0 4.59e-01 100.0% 54.1%
3213942 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 60.0 4.83e-01 100.0% 69.1%
3414808 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 60.0 4.71e-01 100.0% 56.7%
168516 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 61.0 4.48e-01 100.0% 45.1%
3470987 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 4.72e-01 100.0% 66.7%
3746947 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 61.0 4.84e-01 100.0% 62.7%
3755862 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 5.05e-01 100.0% 62.1%
3512463 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.70 57.0 4.47e-01 100.0% 41.7%
3905081 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 4.64e-01 100.0% 56.0%
3264176 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 4.63e-01 100.0% 68.8%
3933443 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 5.54e-01 100.0% 82.9%
3246217 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 4.51e-01 100.0% 57.8%
1560911 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 59.0 4.51e-01 100.0% 54.1%
3414351 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 59.0 4.20e-01 100.0% 46.3%
3546286 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 4.61e-01 100.0% 58.4%
3903512 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 4.62e-01 100.0% 63.2%
3842643 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 4.61e-01 100.0% 56.8%
3780015 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.70 59.0 4.27e-01 100.0% 46.6%
3629993 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.69 59.0 4.63e-01 100.0% 69.2%
3887656 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.69 59.0 4.51e-01 100.0% 58.5%
3477642 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.69 58.0 4.57e-01 100.0% 59.2%
3937603 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.69 58.0 4.57e-01 100.0% 60.8%
3538687 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 58.0 4.72e-01 100.0% 69.5%
4224435 4959.1.1.1 a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.68 57.0 4.33e-01 96.2% 45.4%
3784539 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.67 57.0 4.61e-01 100.0% 53.6%
3236052 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.67 57.0 4.53e-01 100.0% 47.0%
4322510 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 56.0 4.63e-01 100.0% 68.6%
1511313 214.1.1.3 a+b two layers › SH2 › SH2 › SH2 › Cbl_N3 0.67 55.0 4.81e-01 100.0% 63.3%
3768834 214.1.1.3 a+b two layers › SH2 › SH2 › SH2 › Cbl_N3 0.67 56.0 4.74e-01 100.0% 62.1%
3995638 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 57.0 4.34e-01 100.0% 56.2%
3513932 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.67 54.0 4.36e-01 100.0% 44.3%
2132873 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.67 56.0 4.55e-01 100.0% 58.7%
3002312 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 56.0 4.51e-01 100.0% 70.8%
3697816 2008.1.1.99 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 0.66 56.0 3.93e-01 100.0% 52.7%
3557314 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 56.0 4.27e-01 100.0% 55.6%
3516336 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 56.0 4.32e-01 100.0% 57.7%
3502261 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.66 56.0 4.24e-01 100.0% 55.6%
3965594 1.1.13.53 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_3 0.66 55.0 4.57e-01 94.3% 82.1%
3545796 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 55.0 4.42e-01 100.0% 65.2%
3508125 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.65 55.0 4.46e-01 100.0% 65.5%
3212241 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 55.0 4.33e-01 100.0% 65.0%
2322691 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 52.0 4.18e-01 100.0% 48.4%
4354982 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.64 53.0 3.94e-01 98.1% 50.3%
4631930 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.62 52.0 4.01e-01 98.1% 54.6%
4032585 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.62 51.0 4.51e-01 100.0% 69.4%
4597694 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.61 50.0 2.97e-01 98.1% 71.8%
3967702 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.60 49.0 3.92e-01 100.0% 78.4%
4964131 2003.1.1.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.60 50.0 3.52e-01 100.0% 29.7%
3511271 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.59 49.0 3.98e-01 100.0% 66.1%
4972530 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.59 49.0 3.47e-01 100.0% 43.2%
3933768 108.1.1.178 alpha arrays › EF-hand › EF-hand-related › EF-hand › CytochromB561_N 0.58 49.0 3.41e-01 100.0% 27.7%
4316169 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.58 50.0 4.74e-01 98.1% 93.8%
4413343 2003.6.1.5 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.58 46.0 3.10e-01 100.0% 36.3%
3297614 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.58 41.0 3.35e-01 73.6% 39.0%
5056060 328.8.1.1 a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.57 42.0 3.26e-01 83.0% 71.1%
3873854 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 42.0 2.28e-01 86.8% 23.1%
3913068 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.55 40.0 3.30e-01 81.1% 66.7%
3501716 7541.1.1.1 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.53 42.0 3.08e-01 94.3% 85.3%
3164094 7541.1.1.1 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.51 41.0 2.98e-01 94.3% 85.3%
4255608 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.50 38.0 2.86e-01 88.7% 96.2%
D3 medium residues 345-400
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.63 55.0 3.11e-01 100.0% 14.0%
4gqaB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.62 50.0 3.35e-01 92.9% 58.9%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 35.0 2.88e-01 71.4% 69.9%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.68e-01 100.0% 28.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3863197 77.1.1.2 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 0.66 58.0 4.20e-01 100.0% 41.9%
3536554 77.1.1.2 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 0.66 58.0 4.87e-01 98.2% 69.5%
3766391 77.1.1.2 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 0.64 54.0 3.95e-01 96.4% 42.5%
3171508 4252.1.1.5 beta barrels › AttH-like › AttH-like › AttH-like › Svf1 0.64 47.0 3.10e-01 78.6% 45.8%
3520059 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.55 40.0 3.25e-01 82.1% 70.0%
4071151 3651.1.1.0 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.52 35.0 2.74e-01 82.1% 30.0%
3386182 7515.1.1.2 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.52 44.0 2.69e-01 100.0% 89.8%
D4 medium residues 428-446_552-566_596-613
PDB
Domain cluster: representative
D5 medium residues 447-551_567-595_614-660
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5b5lA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.71 67.0 6.39e-01 100.0% 98.6%
4q7qB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.70 66.0 5.78e-01 99.4% 98.8%
4rw0A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.69 65.0 6.51e-01 98.9% 98.4%
4hyqA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.68 63.0 5.69e-01 96.7% 98.7%
1bwpA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.67 63.0 5.91e-01 100.0% 83.5%
4h08A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.66 63.0 6.04e-01 100.0% 89.5%
6se1A01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.66 60.0 5.34e-01 96.1% 86.0%
4xvhA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.66 63.0 5.79e-01 100.0% 98.6%
2h3hA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 44.0 4.86e-01 100.0% 83.1%
3d02A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 43.0 4.74e-01 100.0% 83.0%
1abeA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 44.0 5.02e-01 100.0% 92.0%
5x4kA01 3.90.1640.30 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › 0.63 43.0 4.29e-01 97.8% 65.6%
3g85A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 42.0 4.68e-01 100.0% 87.4%
3h5tA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 42.0 4.73e-01 100.0% 94.0%
2waaA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.59 54.0 5.13e-01 98.9% 97.6%
4bqnB01 3.40.50.12080 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 49.0 4.91e-01 98.3% 90.7%
2bisA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 52.0 4.69e-01 100.0% 95.1%
1td2A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 51.0 4.38e-01 99.4% 82.9%
3s5nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 44.0 3.75e-01 86.7% 93.6%
3lk7A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 48.0 4.59e-01 97.8% 88.3%
7yq0B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 45.0 4.73e-01 100.0% 100.0%
4j9jA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 40.0 3.77e-01 80.7% 92.5%
2xhyD00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 45.0 3.40e-01 95.0% 96.8%
2o55A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.51 43.0 3.91e-01 91.2% 90.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4519237 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.74 69.0 6.11e-01 97.8% 85.2%
4970683 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.66 41.0 4.39e-01 100.0% 71.6%
3779142 2004.1.1.954 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NXPE4_C 0.62 57.0 4.88e-01 98.3% 70.3%
5009636 2007.1.2.11 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.61 45.0 4.77e-01 100.0% 85.0%
3778417 2007.5.1.21 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C 0.60 56.0 4.66e-01 98.9% 66.0%
4946440 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 50.0 4.83e-01 100.0% 79.0%
3949507 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.57 52.0 4.69e-01 100.0% 87.2%
4997061 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.57 52.0 4.75e-01 100.0% 98.8%
4933041 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.55 38.0 4.39e-01 93.9% 96.2%
4610617 2003.6.1.5 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.55 51.0 4.78e-01 100.0% 85.9%
4145907 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.54 47.0 4.80e-01 97.2% 97.1%
5007752 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.53 49.0 4.81e-01 100.0% 99.5%
5057692 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.53 49.0 4.85e-01 100.0% 99.5%
3970600 7512.1.1.31 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.53 47.0 4.62e-01 96.1% 99.5%
3165929 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.53 48.0 4.78e-01 100.0% 98.9%
2897166 7527.1.1.2 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.52 46.0 3.56e-01 100.0% 42.9%
4997383 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.52 47.0 4.65e-01 100.0% 98.5%
4951954 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 46.0 3.83e-01 96.7% 81.6%
4522775 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.51 47.0 4.27e-01 100.0% 94.6%
4979123 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.51 44.0 4.48e-01 100.0% 92.8%
5062908 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.51 46.0 4.61e-01 100.0% 99.5%
4560705 2003.1.11.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › AdoHcyase 0.50 46.0 4.02e-01 100.0% 73.8%