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NC_031056.1__YP_009285434.1__Blue_122__00122

Bact-Vir

NC_031056.1__YP_009285434.1__Blue_122__00122

Identity

Accession:
NC_031056 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-70
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.72 64.0 5.74e-01 100.0% 87.9%
3aiiA02 2.40.240.100 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.72 54.0 5.44e-01 89.2% 81.2%
6dddH00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.68 59.0 5.31e-01 100.0% 88.2%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.66 49.0 3.73e-01 83.1% 57.5%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.65 44.0 4.72e-01 81.5% 82.1%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.86e-01 83.1% 90.2%
2kkcA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 50.0 4.38e-01 84.6% 97.0%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.65 36.0 3.52e-01 81.5% 49.3%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 49.0 4.43e-01 86.2% 60.0%
4lniJ01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.63 49.0 4.21e-01 84.6% 76.0%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 41.0 3.41e-01 86.2% 39.1%
3ng0A01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.63 49.0 4.23e-01 84.6% 75.7%
1c77B00 3.10.20.130 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 47.0 3.90e-01 84.6% 86.7%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.62 47.0 4.41e-01 83.1% 83.1%
5zliA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.62 48.0 4.15e-01 86.2% 74.5%
7asgA02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.62 52.0 4.33e-01 96.9% 84.0%
4h3sA03 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.61 46.0 3.89e-01 81.5% 91.1%
3hhmA03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 46.0 3.66e-01 83.1% 70.9%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 46.0 4.07e-01 84.6% 99.0%
3w1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 50.0 4.41e-01 100.0% 87.5%
2kvzA00 3.10.20.320 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Putative peptidoglycan bound protein (lpxtg motif) 0.57 45.0 4.16e-01 87.7% 77.6%
1e7uA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 44.0 3.37e-01 89.2% 50.3%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 43.0 3.41e-01 84.6% 89.2%
5xpcA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 41.0 3.86e-01 83.1% 78.8%
2x9zA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.54 41.0 3.50e-01 84.6% 77.0%
4bfrB02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 42.0 3.46e-01 87.7% 66.4%
1z2mA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 38.0 3.72e-01 83.1% 92.2%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.52 36.0 3.32e-01 73.8% 98.9%
2jxxA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 41.0 3.96e-01 92.3% 98.7%
1se9A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 39.0 3.50e-01 89.2% 87.1%
3vqiD03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 38.0 3.69e-01 84.6% 98.7%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.22e-01 86.2% 88.7%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 40.0 3.15e-01 86.2% 50.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5041151 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.79 62.0 6.09e-01 83.1% 97.1%
4959950 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.77 61.0 5.53e-01 84.6% 84.7%
4493865 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.77 68.0 5.90e-01 100.0% 85.0%
4169889 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.77 60.0 5.90e-01 84.6% 94.3%
4956032 239.1.1.7 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.76 58.0 6.00e-01 86.2% 88.3%
4950806 4.6.1.8 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › WH_Lhr 0.76 57.0 6.08e-01 84.6% 94.5%
4968500 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.76 58.0 5.95e-01 86.2% 85.7%
4618294 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.76 67.0 5.94e-01 100.0% 85.3%
4564499 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.76 68.0 6.07e-01 100.0% 86.7%
4265687 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.76 67.0 5.94e-01 100.0% 86.3%
5041150 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.75 59.0 5.78e-01 84.6% 97.1%
4069101 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.75 66.0 5.77e-01 100.0% 82.0%
4285300 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.74 65.0 5.78e-01 100.0% 86.3%
4452931 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.73 65.0 5.54e-01 100.0% 81.0%
4065495 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.73 65.0 5.64e-01 100.0% 82.0%
4414535 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.73 65.0 5.64e-01 100.0% 82.0%
3964275 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.73 64.0 5.67e-01 100.0% 86.3%
4323001 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.73 64.0 5.56e-01 100.0% 85.0%
4343568 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.72 59.0 5.79e-01 89.2% 90.0%
4197939 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.72 64.0 5.64e-01 100.0% 86.3%
4129323 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.72 63.0 5.62e-01 100.0% 86.3%
3385880 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.72 64.0 5.75e-01 100.0% 88.9%
4139867 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.72 63.0 5.60e-01 100.0% 85.3%
4480497 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.71 58.0 5.72e-01 90.8% 88.6%
3707909 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 56.0 5.04e-01 87.7% 93.3%
4059008 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.70 56.0 5.64e-01 89.2% 87.7%
3184129 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.69 56.0 5.52e-01 89.2% 90.0%
4946739 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.69 56.0 5.61e-01 89.2% 90.8%
3247149 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 52.0 4.81e-01 83.1% 89.4%
3710465 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.68 55.0 4.32e-01 89.2% 55.7%
3610029 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.68 54.0 3.93e-01 89.2% 41.1%
4158664 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.68 55.0 4.97e-01 89.2% 82.2%
4573501 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.68 55.0 4.86e-01 89.2% 76.8%
3993649 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.67 52.0 4.53e-01 84.6% 82.0%
4080304 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.67 54.0 4.86e-01 89.2% 86.7%
3832573 221.1.1.235 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Zn_SUZ12 0.67 52.0 5.09e-01 83.1% 94.3%
5008233 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.66 50.0 4.96e-01 89.2% 77.1%
3745675 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.65 51.0 4.28e-01 84.6% 88.2%
3599783 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.65 53.0 4.62e-01 90.8% 80.0%
3586242 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.65 52.0 3.93e-01 89.2% 48.1%
4078446 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.64 52.0 3.71e-01 89.2% 43.1%
3264605 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 50.0 4.80e-01 84.6% 97.3%
4383498 239.2.1.1 beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.64 51.0 4.25e-01 89.2% 65.0%
5035653 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.64 48.0 5.00e-01 89.2% 90.0%
4588388 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.64 36.0 3.78e-01 70.8% 60.0%
4945214 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.64 51.0 3.77e-01 90.8% 44.9%
4030356 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.64 51.0 3.61e-01 90.8% 37.2%
3605971 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 49.0 4.16e-01 84.6% 98.2%
4970425 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.63 51.0 5.11e-01 89.2% 90.8%
3443390 221.1.1.28 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SOK 0.63 48.0 4.19e-01 84.6% 96.2%
5021656 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.61 42.0 4.60e-01 70.8% 94.0%
4976754 221.1.1.16 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TGS 0.61 47.0 4.37e-01 86.2% 88.2%
3717225 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 46.0 4.02e-01 83.1% 96.0%
4020877 239.4.1.0 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain 0.60 46.0 4.03e-01 86.2% 86.7%
3424421 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 46.0 4.13e-01 86.2% 95.8%
3487190 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 45.0 4.07e-01 84.6% 100.0%
4492767 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 48.0 4.42e-01 89.2% 92.9%
3476727 221.1.1.51 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 0.59 44.0 3.94e-01 83.1% 95.0%
3581304 389.1.3.0 few secondary structure elements › EGF-like › EGF-related › TNF receptor-like 0.58 41.0 4.45e-01 93.8% 89.1%
4995785 221.3.1.0 a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains 0.57 42.0 4.51e-01 80.0% 100.0%
3999042 10.13.1.1 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.56 38.0 3.35e-01 78.5% 47.4%
4449990 60.1.1.12 beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › Treslin_M 0.56 43.0 3.30e-01 81.5% 67.3%
5047472 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 37.0 3.73e-01 100.0% 72.3%
3700562 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.52 38.0 3.17e-01 83.1% 77.8%
4016003 239.3.1.0 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.51 42.0 3.33e-01 100.0% 86.3%
3394740 11.1.5.84 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › ERMP1_C 0.51 38.0 3.07e-01 83.1% 100.0%
3973363 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 40.0 3.84e-01 86.2% 96.0%