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NC_031057.1__YP_009285548.1__BI032_gp010__00010

Bact-Vir

NC_031057.1__YP_009285548.1__BI032_gp010__00010

Identity

Accession:
NC_031057 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Pseudotevenvirus› Citrobacter_phage_vB_CfrM_CfP1

TaxID: 1871313

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-78
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 47.0 5.34e-01 100.0% 96.1%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 5.09e-01 100.0% 96.2%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 44.0 4.75e-01 100.0% 94.7%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.59 40.0 4.29e-01 100.0% 85.0%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 46.0 3.87e-01 87.3% 86.4%
2aj2A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.54 40.0 3.68e-01 100.0% 59.8%
2zxiD02 2.40.30.260 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 46.0 3.84e-01 98.6% 56.5%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.51 44.0 4.02e-01 95.8% 78.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3715776 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 40.0 4.18e-01 100.0% 61.5%
3854638 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.70 47.0 4.16e-01 100.0% 49.0%
4972872 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 41.0 4.78e-01 100.0% 95.6%
4030850 4.1.1.165 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6501 0.67 48.0 4.57e-01 98.6% 63.5%
4947695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 5.23e-01 100.0% 84.0%
4679625 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.73e-01 100.0% 81.7%
3259044 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 46.0 5.10e-01 100.0% 98.2%
5012053 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 49.0 4.93e-01 100.0% 85.1%
3713613 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.89e-01 100.0% 89.2%
4933580 375.1.4.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C 0.61 42.0 4.62e-01 94.4% 94.5%
5001537 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.56 45.0 2.73e-01 93.0% 43.9%
3592525 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.12e-01 97.2% 62.7%
3610796 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 4.08e-01 94.4% 100.0%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.54 36.0 3.77e-01 100.0% 76.9%
D2 high residues 132-221
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.75 69.0 6.34e-01 100.0% 89.4%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.72 54.0 5.42e-01 77.8% 94.4%
5mi7A03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.69 51.0 3.60e-01 76.7% 33.7%
2chnB03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.69 51.0 4.01e-01 76.7% 49.4%
3n00A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.65 52.0 4.15e-01 87.8% 95.1%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.65 52.0 5.23e-01 86.7% 84.6%
6xm1A02 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.64 45.0 4.19e-01 73.3% 70.8%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.64 48.0 4.30e-01 78.9% 63.9%
1g2nA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.63 49.0 3.60e-01 84.4% 87.0%
3ezuA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 43.0 3.47e-01 73.3% 91.2%
4j05A00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.61 54.0 3.49e-01 100.0% 53.8%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.60 50.0 3.56e-01 91.1% 89.8%
5h5mA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 43.0 3.83e-01 77.8% 59.2%
3ihuA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.58 47.0 4.03e-01 84.4% 75.5%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 43.0 4.02e-01 77.8% 83.9%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 44.0 3.77e-01 82.2% 86.7%
1kpgD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 39.0 2.86e-01 71.1% 32.2%
4dkcB00 1.20.1250.80 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 0.52 40.0 3.38e-01 83.3% 80.0%
4q5qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 38.0 3.68e-01 78.9% 90.5%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3518263 4207.1.2.1 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › Med7 0.78 56.0 4.97e-01 73.3% 60.0%
3758339 5086.1.1.65 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › USHBP1_PDZ-bd 0.78 46.0 4.69e-01 77.8% 60.0%
4021061 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.78 54.0 4.93e-01 71.1% 58.3%
3841428 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.72 52.0 5.30e-01 75.6% 80.0%
3793592 3291.1.1.156 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Gpi1 0.71 49.0 3.75e-01 71.1% 62.5%
3357695 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.71 49.0 4.37e-01 71.1% 53.6%
3602796 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.70 47.0 4.53e-01 72.2% 62.0%
4066866 109.4.1.179 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nro1 0.69 50.0 3.27e-01 75.6% 29.6%
3687029 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.69 49.0 4.81e-01 77.8% 69.5%
3195087 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.67 48.0 4.49e-01 74.4% 68.2%
5082516 5069.1.1.4 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct 0.67 50.0 4.20e-01 78.9% 48.7%
5059993 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.64 48.0 4.65e-01 85.6% 72.7%
3719607 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.63 52.0 4.30e-01 92.2% 95.8%
3585987 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 42.0 4.55e-01 71.1% 89.3%
3493153 2485.1.1.49 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_12 0.61 45.0 3.42e-01 80.0% 31.6%
3744495 109.4.1.109 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.57 44.0 2.83e-01 84.4% 19.3%
4026662 4207.1.2.0 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region 0.56 42.0 3.61e-01 77.8% 95.0%
3507024 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.55 48.0 3.38e-01 100.0% 53.3%
3786516 5069.1.1.4 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct 0.54 47.0 3.49e-01 97.8% 57.1%
3486995 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.50 38.0 3.40e-01 82.2% 56.9%