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NC_031070.1__YP_009287032.1__BI006_gp156__00156

Bact-Vir

NC_031070.1__YP_009287032.1__BI006_gp156__00156

Identity

Accession:
NC_031070 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-81
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.67 50.0 4.21e-01 79.5% 98.5%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.66 51.0 4.93e-01 83.3% 97.8%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.65 48.0 3.91e-01 78.2% 50.7%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.64 50.0 4.56e-01 83.3% 98.0%
3ffzA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 43.0 3.32e-01 70.5% 94.9%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 50.0 4.02e-01 87.2% 72.0%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.63 47.0 4.35e-01 79.5% 90.0%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.62 44.0 2.94e-01 75.6% 100.0%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 53.0 3.99e-01 96.2% 98.5%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 45.0 4.04e-01 78.2% 93.0%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 45.0 3.03e-01 76.9% 88.7%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 45.0 2.86e-01 78.2% 86.9%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 48.0 3.14e-01 85.9% 88.5%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.61 44.0 2.89e-01 75.6% 100.0%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.60 40.0 3.57e-01 70.5% 82.9%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.60 36.0 3.98e-01 71.8% 77.0%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 3.20e-01 75.6% 48.6%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 50.0 3.96e-01 96.2% 80.2%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 42.0 2.83e-01 76.9% 100.0%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.72e-01 97.4% 80.4%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 42.0 3.66e-01 78.2% 57.5%
1t16A00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.57 46.0 2.98e-01 92.3% 95.8%
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.57 41.0 3.95e-01 78.2% 94.7%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.57 39.0 3.10e-01 73.1% 91.0%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.57 42.0 3.48e-01 78.2% 64.7%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.57 44.0 3.59e-01 83.3% 51.4%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.57 38.0 3.67e-01 78.2% 60.0%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.55 42.0 2.87e-01 89.7% 21.9%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.48e-01 94.9% 83.9%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.82e-01 97.4% 83.3%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.55 33.0 3.52e-01 75.6% 69.1%
3zxkA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.52e-01 100.0% 76.9%
1epwA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.36e-01 96.2% 70.8%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 40.0 3.55e-01 78.2% 99.1%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.53 38.0 2.82e-01 78.2% 65.3%
3ecqA01 2.60.120.870 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.60e-01 100.0% 69.9%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 46.0 3.11e-01 96.2% 87.8%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 40.0 3.68e-01 84.6% 95.3%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.51 45.0 3.63e-01 98.7% 86.9%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 39.0 3.07e-01 84.6% 69.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044594 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.72 51.0 4.86e-01 73.1% 78.9%
4298074 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.67 57.0 4.36e-01 92.3% 98.9%
3695223 5.1.4.515 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF26607 0.67 50.0 3.19e-01 78.2% 94.2%
3546198 5.1.4.149 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.67 50.0 3.29e-01 79.5% 92.8%
3592221 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 46.0 3.98e-01 71.8% 77.1%
3387958 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.66 48.0 3.92e-01 78.2% 49.7%
3512735 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.66 48.0 3.49e-01 78.2% 65.3%
3591269 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.65 44.0 2.88e-01 70.5% 90.6%
4380974 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.64 53.0 4.28e-01 93.6% 98.8%
3794738 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.64 53.0 3.98e-01 92.3% 75.4%
3234981 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.63 46.0 3.44e-01 78.2% 68.6%
3618023 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.62 48.0 3.18e-01 82.1% 87.8%
4015572 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 53.0 3.55e-01 96.2% 96.0%
5081724 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 45.0 3.36e-01 78.2% 79.5%
5033412 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 44.0 3.24e-01 76.9% 87.3%
1140832 809.2.1.1 a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like 0.61 43.0 4.88e-01 74.4% 100.0%
3663999 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.61 47.0 3.16e-01 87.2% 81.5%
3597933 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 44.0 3.38e-01 76.9% 78.8%
3254908 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 50.0 3.27e-01 88.5% 71.9%
1171964 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.60 43.0 4.93e-01 74.4% 100.0%
3589527 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.60 41.0 2.71e-01 70.5% 86.8%
3273324 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.59 44.0 2.73e-01 78.2% 93.1%
3743230 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.59 43.0 2.70e-01 78.2% 82.9%
1171961 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.58 41.0 4.60e-01 74.4% 100.0%
4017127 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 46.0 3.13e-01 84.6% 94.6%
4979564 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.58 38.0 3.98e-01 76.9% 74.3%
3267291 5.1.3.17 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotrans 0.58 45.0 2.98e-01 84.6% 91.8%
4354023 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 48.0 3.63e-01 92.3% 73.7%
5003245 243.8.1.0 a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein 0.57 41.0 4.31e-01 74.4% 84.3%
3556954 109.4.1.69 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IKI3 0.57 45.0 3.11e-01 87.2% 62.1%
5013467 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 46.0 3.03e-01 87.2% 75.5%
3196366 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.57 44.0 3.37e-01 84.6% 77.8%
3902698 5.1.4.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.56 45.0 3.10e-01 87.2% 64.8%
3506401 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 43.0 2.86e-01 83.3% 76.8%
3929846 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 46.0 3.08e-01 92.3% 79.2%
3463325 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 48.0 3.37e-01 97.4% 39.6%
4939442 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.95e-01 88.5% 62.1%
309454 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.55 44.0 3.73e-01 88.5% 93.9%
3735753 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 2.47e-01 87.2% 20.3%
3508283 5.1.5.156 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_RSE1_1st 0.55 44.0 2.73e-01 87.2% 80.0%
3604518 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.55 45.0 4.17e-01 91.0% 88.0%
3602148 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 4.05e-01 87.2% 89.0%
4972317 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 42.0 2.92e-01 82.1% 41.4%
3653889 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 44.0 2.88e-01 88.5% 71.2%
3839298 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 39.0 3.39e-01 75.6% 70.4%
5027067 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.54 39.0 3.40e-01 76.9% 100.0%
3830081 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.54 45.0 2.96e-01 91.0% 58.5%
3656110 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.53 44.0 2.90e-01 91.0% 94.5%
3410261 5.1.4.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.53 42.0 2.99e-01 87.2% 63.7%
3242741 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 45.0 3.15e-01 94.9% 29.3%
3993370 5.1.3.25 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.53 44.0 3.07e-01 94.9% 91.7%
5010672 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.53 39.0 3.44e-01 79.5% 86.7%
5011281 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.53 42.0 3.66e-01 88.5% 98.4%
5012271 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.53 42.0 2.82e-01 88.5% 28.6%
139092 5.1.4.14 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.52 43.0 2.70e-01 88.5% 23.4%
3484155 2011.2.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like 0.52 40.0 2.86e-01 82.1% 42.2%
3789625 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.52 40.0 3.41e-01 85.9% 100.0%
3514491 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.52 43.0 2.78e-01 92.3% 41.0%
3218903 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.51 44.0 3.25e-01 96.2% 36.7%
4456195 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 37.0 3.31e-01 79.5% 86.7%
3648728 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.50 41.0 2.71e-01 91.0% 79.1%
D2 high residues 90-150
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zyzA01 3.20.20.300 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain 0.55 37.0 2.42e-01 70.5% 23.4%
5tipA01 2.70.9.10 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 0.54 47.0 3.34e-01 100.0% 70.2%
3fm3A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.81e-01 91.8% 86.3%