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NC_031070.1__YP_009287123.1__BI006_gp247__00247

Bact-Vir

NC_031070.1__YP_009287123.1__BI006_gp247__00247

Identity

Accession:
NC_031070 ↗
Kingdom:
phage

Quality

65.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 100-181
PDB
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g1iA02 3.30.300.170 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.78 49.0 5.19e-01 89.0% 73.2%
3gkuC02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.71 54.0 5.25e-01 95.1% 74.2%
2pt7G01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.69 48.0 4.93e-01 90.2% 76.9%
4ftfA00 3.30.300.250 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.68 56.0 5.07e-01 97.6% 67.0%
5xyiD01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.68 46.0 4.53e-01 90.2% 65.2%
2zztA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.68 47.0 4.73e-01 90.2% 72.0%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.66 59.0 3.88e-01 100.0% 30.1%
1a10I00 3.30.10.10 Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A 0.65 31.0 3.51e-01 87.8% 58.7%
2d27A02 3.30.300.160 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain 0.64 36.0 3.64e-01 90.2% 52.9%
5iipA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.64 34.0 3.03e-01 90.2% 34.5%
3gr0D01 3.30.70.1780 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 33.0 4.34e-01 84.1% 100.0%
3ux3A01 3.30.300.130 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) 0.62 44.0 4.20e-01 90.2% 62.9%
1hh2P04 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.61 39.0 4.21e-01 90.2% 77.9%
4py9A02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.61 46.0 4.03e-01 100.0% 53.2%
4tpsD00 3.30.300.180 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DnaA, N-terminal domain 0.61 41.0 4.09e-01 89.0% 67.9%
4dqwA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 32.0 2.95e-01 90.2% 36.3%
3w0eA00 3.30.10.10 Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A 0.58 31.0 3.36e-01 90.2% 61.8%
3vseA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.58 36.0 3.90e-01 85.4% 75.4%
3vx8A02 3.40.140.70 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain 0.57 49.0 3.99e-01 100.0% 67.7%
1wtjA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.55 50.0 3.80e-01 100.0% 82.2%
2ymaA00 3.10.310.60 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.55 46.0 4.05e-01 98.8% 63.0%
1z2iA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.54 48.0 3.90e-01 98.8% 96.2%
1jr7A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.54 47.0 3.24e-01 98.8% 85.9%
1rfmA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.54 48.0 3.52e-01 97.6% 75.8%
2as0A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.54 34.0 3.65e-01 84.1% 74.3%
1wdkA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.53 37.0 2.52e-01 72.0% 44.1%
5eufA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 42.0 3.18e-01 92.7% 67.1%
1udxA03 3.30.300.350 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › GTP-binding protein OBG, C-terminal domain 0.52 40.0 4.21e-01 100.0% 95.9%
2epgB00 3.90.1860.10 Alpha Beta › Alpha-Beta Complex › tRNA-splicing ligase RtcB › tRNA-splicing ligase RtcB 0.52 40.0 2.63e-01 87.8% 58.9%
2bghA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 38.0 2.93e-01 80.5% 57.5%
2p9mB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 36.0 3.17e-01 74.4% 82.2%
1wz8A01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 45.0 3.37e-01 100.0% 95.6%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.50 31.0 3.39e-01 86.6% 75.8%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 34.0 2.96e-01 70.7% 80.0%
2yziB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 34.0 2.99e-01 72.0% 79.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5057363 327.18.1.0 a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A 0.73 45.0 4.96e-01 90.2% 76.5%
5081017 327.11.1.5 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 0.72 39.0 4.25e-01 90.2% 62.9%
5005780 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.71 54.0 5.01e-01 97.6% 63.8%
3786473 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.70 50.0 4.83e-01 89.0% 65.3%
4139704 327.10.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.69 48.0 4.64e-01 92.7% 64.4%
4165275 327.6.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane 0.69 55.0 4.49e-01 100.0% 47.3%
4941259 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.69 53.0 4.50e-01 100.0% 50.4%
5079059 327.11.1.16 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 0.68 42.0 4.36e-01 90.2% 68.0%
3596845 327.2.1.0 a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like 0.67 46.0 4.70e-01 89.0% 73.4%
3740635 327.4.1.0 a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain 0.67 49.0 4.50e-01 90.2% 60.0%
4143913 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.67 41.0 4.25e-01 89.0% 66.7%
4105843 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 37.0 4.34e-01 85.4% 80.0%
3602634 327.11.1.16 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 0.66 41.0 4.38e-01 90.2% 72.9%
3584086 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.66 41.0 4.14e-01 89.0% 61.2%
3974347 327.14.1.1 a+b two layers › Alpha-lytic protease prodomain-like › C-terminal domain of DNA Polymerase III subunit tau › C-terminal domain of DNA Polymerase III subunit tau › DNA_pol3_tau_5 0.66 44.0 3.98e-01 90.2% 50.9%
5004257 327.11.1.16 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 0.65 40.0 4.43e-01 90.2% 78.5%
5014590 327.11.1.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 0.65 42.0 4.34e-01 92.7% 70.7%
3166100 327.14.1.1 a+b two layers › Alpha-lytic protease prodomain-like › C-terminal domain of DNA Polymerase III subunit tau › C-terminal domain of DNA Polymerase III subunit tau › DNA_pol3_tau_5 0.65 44.0 3.69e-01 91.5% 41.3%
4951526 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.65 40.0 4.19e-01 90.2% 68.0%
4081051 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.65 44.0 4.57e-01 90.2% 76.0%
4113720 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.64 46.0 4.70e-01 91.5% 77.5%
5080691 244.4.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.63 51.0 4.74e-01 90.2% 97.2%
4652200 327.10.1.11 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DNA_pol3_a_NII 0.63 43.0 4.29e-01 90.2% 68.2%
4955977 2500.1.1.4 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › DUF711 0.63 53.0 3.61e-01 97.6% 70.1%
3742000 294.1.1.0 a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors 0.63 31.0 3.68e-01 90.2% 69.1%
4997583 327.11.1.16 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 0.63 40.0 4.24e-01 91.5% 74.3%
4425045 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.63 44.0 4.28e-01 92.7% 66.7%
5044455 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.62 52.0 4.16e-01 93.9% 67.6%
3196538 294.1.1.2 a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › Inhibitor_I78 0.62 32.0 3.50e-01 90.2% 59.4%
4946041 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.62 38.0 4.16e-01 89.0% 76.9%
4097691 327.10.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.62 43.0 4.25e-01 90.2% 69.4%
3594961 3003.1.1.0 a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) 0.62 50.0 4.52e-01 87.8% 88.2%
4937796 327.11.1.16 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_1 0.61 38.0 4.20e-01 91.5% 80.0%
4020903 294.1.1.0 a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors 0.61 31.0 3.46e-01 89.0% 61.5%
4097041 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.61 41.0 4.18e-01 90.2% 71.2%
4079598 327.10.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.61 40.0 4.12e-01 89.0% 70.0%
4082710 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.60 40.0 4.13e-01 87.8% 73.3%
4530557 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.60 41.0 4.15e-01 92.7% 70.6%
1903937 276.1.1.1 a+b three layers › L-sulfolactate dehydrogenase-like › L-sulfolactate dehydrogenase-like › L-sulfolactate dehydrogenase-like › Ldh_2 0.58 53.0 3.45e-01 100.0% 59.0%
4530006 327.10.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.58 39.0 3.71e-01 91.5% 58.0%
3508968 2496.1.1.1 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO 0.57 51.0 3.78e-01 100.0% 52.9%
5065820 244.4.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.57 45.0 3.56e-01 89.0% 98.9%
5028532 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.56 45.0 4.01e-01 90.2% 94.4%
4531259 327.5.1.3 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_2 0.55 46.0 4.16e-01 92.7% 68.7%
4032418 327.10.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.55 40.0 3.71e-01 92.7% 58.2%
4133737 7582.1.1.2 a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.55 45.0 3.53e-01 92.7% 80.9%
180133 2486.1.1.1 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 0.55 38.0 4.12e-01 95.1% 95.3%
5000380 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.54 43.0 4.47e-01 90.2% 93.3%
4950281 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.54 35.0 3.64e-01 90.2% 72.0%
4147916 10.12.1.41 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CsiD 0.54 47.0 3.23e-01 100.0% 86.5%
4308473 10.12.1.41 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CsiD 0.53 46.0 3.12e-01 100.0% 82.5%
2756766 2008.2.1.2 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 0.52 45.0 3.90e-01 98.8% 76.9%
5062574 328.12.1.0 a+b two layers › IF3-like › IF3-like domain in Nudix hydrolase › IF3-like domain in Nudix hydrolase 0.52 45.0 4.34e-01 100.0% 100.0%
3463329 327.18.1.1 a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › Ribosomal_S7e 0.52 46.0 4.21e-01 100.0% 87.0%
3492342 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.52 43.0 3.35e-01 93.9% 67.4%
3615775 2004.5.1.0 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.50 34.0 2.69e-01 72.0% 88.5%
3577733 2484.1.1.6 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.50 39.0 2.66e-01 89.0% 66.3%