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NC_031074.1__YP_009287484.1__BIZ77_gp163__00014

Bact-Vir

Identity

Accession:: NC_031074 ↗
Kingdom:: phage

Quality

72.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bantamvirus› Gordonia_phage_Bantam

TaxID: 1887641

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 130-204

PDB

Domain cluster: rep: MN908688.1__QIG58382.1__SEA_CORNIE_4__00004__D122-183

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2lrmA00	1.10.890.30	Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein	0.66	50.0	4.81e-01	81.3%	81.0%
1nmrA01	1.10.1900.10	Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein	0.65	52.0	5.22e-01	93.3%	88.2%
2qkbA00	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.58	40.0	3.24e-01	72.0%	83.6%
4g6dB02	6.10.140.1800	Special › Helix non-globular › Helix Hairpins ›	0.58	42.0	4.10e-01	76.0%	81.5%
3tbiB02	6.10.140.1670	Special › Helix non-globular › Helix Hairpins ›	0.55	40.0	3.79e-01	100.0%	61.0%
1q5nA03	1.10.40.30	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain)	0.55	39.0	3.82e-01	73.3%	67.9%
2fgyA01	1.20.120.1310	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain	0.53	40.0	3.64e-01	96.0%	58.9%
1rktA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	43.0	3.54e-01	96.0%	99.3%
3kksB00	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.52	39.0	3.18e-01	82.7%	87.5%
4h63K00	1.10.287.3490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.51	35.0	3.25e-01	74.7%	54.1%
1pujA02	1.10.1580.10	Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 ›	0.51	36.0	3.38e-01	73.3%	81.7%
1z72A00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.50	38.0	2.81e-01	82.7%	67.6%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4929992	873.1.1.20 ↗	a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › DUF6125	0.72	42.0	3.25e-01	80.0%	27.5%
3833955	1075.5.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE	0.68	57.0	3.99e-01	94.7%	73.6%
3173246	143.1.1.0 ↗	alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain	0.65	46.0	4.47e-01	74.7%	88.1%
3951200	142.1.1.3 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2	0.65	49.0	4.60e-01	82.7%	78.9%
4984481	103.5.1.0 ↗	alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like	0.59	41.0	3.84e-01	73.3%	94.7%
4218530	5038.2.1.1 ↗	alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG	0.57	43.0	3.63e-01	84.0%	74.8%
3730771	4953.1.1.2 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C	0.54	43.0	4.21e-01	88.0%	77.6%
4227843	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.51	37.0	3.37e-01	77.3%	60.0%