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NC_031074.1__YP_009287541.1__BIZ77_gp106__00071
Bact-VirNC_031074.1__YP_009287541.1__BIZ77_gp106__00071
Identity
- Accession:
- NC_031074 ↗
- Kingdom:
- phage
Quality
79.9
mean pLDDT
Taxonomy
TaxID: 1887641
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-98
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bdeB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 45.0 | 3.83e-01 | 80.4% | 54.5% |
| 6iw6A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.60 | 43.0 | 3.52e-01 | 76.8% | 92.6% |
| 1nxiA00 | 3.30.70.970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like | 0.59 | 44.0 | 3.45e-01 | 83.9% | 57.6% |
| 2pffB05 | 3.30.70.2430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 39.0 | 3.89e-01 | 82.1% | 65.6% |
| 3bc8A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 45.0 | 3.44e-01 | 85.7% | 47.1% |
| 2yweA03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.58 | 41.0 | 3.81e-01 | 82.1% | 54.9% |
| 1xs5A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 48.0 | 3.73e-01 | 98.2% | 41.8% |
| 3ghjA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 41.0 | 3.35e-01 | 83.9% | 40.5% |
| 6u26A01 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.55 | 45.0 | 4.01e-01 | 96.4% | 79.5% |
| 1o69A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 41.0 | 3.15e-01 | 83.9% | 57.4% |
| 1vhhA00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.54 | 41.0 | 3.10e-01 | 87.5% | 84.7% |
| 2lrrA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.54 | 36.0 | 3.49e-01 | 83.9% | 58.6% |
| 2basA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 42.0 | 3.27e-01 | 85.7% | 58.6% |
| 1e5mA01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 38.0 | 2.56e-01 | 78.6% | 90.9% |
| 1whnA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 36.0 | 3.14e-01 | 76.8% | 77.2% |
| 7wezA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 37.0 | 3.49e-01 | 82.1% | 64.0% |
| 1nbeB01 | 3.30.70.140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain | 0.51 | 36.0 | 3.19e-01 | 78.6% | 47.3% |
| 1lkxC03 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.51 | 35.0 | 2.99e-01 | 75.0% | 61.7% |
| 3lpzA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 41.0 | 2.69e-01 | 96.4% | 24.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3225455 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.64 | 42.0 | 4.15e-01 | 75.0% | 63.3% |
| 3821519 | 387.1.5.19 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Defensin | 0.63 | 45.0 | 4.69e-01 | 82.1% | 91.8% |
| 3826015 | 387.1.5.15 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SLR1-BP | 0.59 | 43.0 | 4.13e-01 | 82.1% | 78.6% |
| 3837087 | 387.1.5.15 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SLR1-BP | 0.59 | 42.0 | 4.39e-01 | 82.1% | 86.0% |
| 3454167 | 304.9.1.46 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PHM7_cyt | 0.58 | 46.0 | 3.77e-01 | 98.2% | 65.6% |
| 5024019 | 327.16.1.18 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Se_S_carrier | 0.58 | 48.0 | 4.34e-01 | 98.2% | 91.3% |
| 4980949 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.57 | 44.0 | 3.89e-01 | 85.7% | 98.8% |
| 3807358 | 387.1.5.15 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SLR1-BP | 0.57 | 41.0 | 4.24e-01 | 82.1% | 91.7% |
| 3317423 | 387.1.5.15 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SLR1-BP | 0.57 | 41.0 | 4.22e-01 | 83.9% | 92.0% |
| 3945810 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.57 | 46.0 | 3.87e-01 | 92.9% | 99.0% |
| 3720185 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 47.0 | 3.72e-01 | 100.0% | 84.6% |
| 3835026 | 5086.1.1.204 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PHM7_cyt | 0.56 | 45.0 | 3.68e-01 | 98.2% | 75.8% |
| 4521383 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.55 | 43.0 | 3.63e-01 | 91.1% | 88.2% |
| 3326011 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 45.0 | 3.63e-01 | 100.0% | 64.0% |
| 3586210 | 2501.1.1.0 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II | 0.54 | 39.0 | 3.51e-01 | 80.4% | 91.8% |
| 3214492 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.53 | 37.0 | 3.54e-01 | 83.9% | 62.9% |
| 3710803 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.52 | 43.0 | 2.89e-01 | 98.2% | 31.5% |
| 3825101 | 387.1.5.15 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SLR1-BP | 0.52 | 37.0 | 3.71e-01 | 83.9% | 76.7% |
| 4121827 | 304.9.1.34 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SET1_RBD | 0.52 | 43.0 | 3.35e-01 | 100.0% | 70.7% |
| 3633472 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.50 | 40.0 | 2.68e-01 | 87.5% | 62.7% |