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NC_031087.1__YP_009288768.2__kpv477_092__00092
Bact-VirNC_031087.1__YP_009288768.2__kpv477_092__00092
Identity
- Accession:
- NC_031087 ↗
- Kingdom:
- phage
Quality
86.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Jiaodavirus›
Klebsiella_phage_vB_KpnM_KpV477
TaxID: 1852625
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-66
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.82 | 71.0 | 6.50e-01 | 100.0% | 73.7% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.81 | 70.0 | 6.44e-01 | 100.0% | 73.7% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.72 | 64.0 | 5.84e-01 | 100.0% | 74.7% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.71 | 58.0 | 5.64e-01 | 100.0% | 80.6% |
| 2cuwA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.70 | 61.0 | 5.55e-01 | 100.0% | 97.6% |
| 5k8mA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 59.0 | 4.65e-01 | 100.0% | 99.2% |
| 4mt1A07 | 3.30.70.1440 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.65 | 53.0 | 4.53e-01 | 93.3% | 88.2% |
| 2pokA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 54.0 | 4.03e-01 | 98.3% | 99.4% |
| 3rgzA02 | 3.30.1490.310 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.63 | 48.0 | 4.82e-01 | 98.3% | 83.6% |
| 6fh1B01 | 3.30.590.10 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain | 0.62 | 50.0 | 3.54e-01 | 100.0% | 66.1% |
| 3nrbB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 50.0 | 4.60e-01 | 96.7% | 97.6% |
| 2j58A03 | 3.30.1950.10 | Alpha Beta › 2-Layer Sandwich › wza like fold › wza like domain | 0.60 | 49.0 | 4.60e-01 | 98.3% | 100.0% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.59 | 50.0 | 4.07e-01 | 100.0% | 51.2% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 50.0 | 4.14e-01 | 100.0% | 95.7% |
| 6p3xB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.59 | 49.0 | 3.68e-01 | 100.0% | 35.6% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.58 | 45.0 | 3.87e-01 | 90.0% | 50.0% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 49.0 | 4.40e-01 | 100.0% | 96.7% |
| 1j27A00 | 3.30.70.1120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like | 0.58 | 48.0 | 4.24e-01 | 100.0% | 92.9% |
| 1vk8A00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 48.0 | 4.29e-01 | 100.0% | 89.2% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 48.0 | 4.48e-01 | 100.0% | 95.0% |
| 3oq2A00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 49.0 | 4.22e-01 | 100.0% | 75.8% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 45.0 | 4.09e-01 | 100.0% | 89.9% |
| 1u8sA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 45.0 | 4.09e-01 | 95.0% | 95.2% |
| 6jptA00 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.54 | 39.0 | 3.25e-01 | 80.0% | 70.2% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.54 | 41.0 | 3.70e-01 | 98.3% | 57.6% |
| 1darA05 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 4.01e-01 | 98.3% | 85.1% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.54 | 44.0 | 3.20e-01 | 93.3% | 90.2% |
| 3cjlA00 | 3.10.20.850 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 | 0.54 | 37.0 | 3.31e-01 | 73.3% | 64.8% |
| 4hscX04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.53 | 40.0 | 3.29e-01 | 100.0% | 44.5% |
| 5xbfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 46.0 | 4.10e-01 | 100.0% | 72.4% |
| 1rylA00 | 3.40.1760.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family | 0.53 | 41.0 | 3.19e-01 | 91.7% | 99.4% |
| 1ksiA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.53 | 43.0 | 2.69e-01 | 100.0% | 46.6% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 42.0 | 3.80e-01 | 100.0% | 62.5% |
| 5d4nC00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 3.77e-01 | 96.7% | 92.9% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 41.0 | 3.81e-01 | 93.3% | 94.0% |
| 2rilA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 43.0 | 3.82e-01 | 100.0% | 93.7% |
| 2z5bB01 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.51 | 42.0 | 3.44e-01 | 95.0% | 68.1% |
| 2cqiA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 40.0 | 3.48e-01 | 93.3% | 75.7% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.87e-01 | 96.7% | 96.3% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.50 | 41.0 | 3.65e-01 | 95.0% | 91.5% |
| 3psfA03 | 1.10.3500.10 | Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like | 0.50 | 38.0 | 2.40e-01 | 81.7% | 59.3% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983090 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.86 | 75.0 | 6.76e-01 | 100.0% | 70.9% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.85 | 72.0 | 7.48e-01 | 100.0% | 98.2% |
| 2831852 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.85 | 74.0 | 6.07e-01 | 100.0% | 55.4% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.84 | 73.0 | 7.45e-01 | 100.0% | 94.9% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.84 | 74.0 | 5.98e-01 | 100.0% | 53.3% |
| 4951473 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.84 | 73.0 | 7.21e-01 | 100.0% | 88.9% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.84 | 73.0 | 7.32e-01 | 100.0% | 93.3% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.84 | 73.0 | 6.89e-01 | 100.0% | 80.0% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.83 | 73.0 | 6.49e-01 | 100.0% | 68.7% |
| 2106285 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.83 | 72.0 | 5.81e-01 | 100.0% | 51.9% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.83 | 72.0 | 6.62e-01 | 100.0% | 74.7% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.83 | 72.0 | 7.31e-01 | 100.0% | 96.6% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.83 | 72.0 | 7.02e-01 | 100.0% | 87.5% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.82 | 60.0 | 6.52e-01 | 100.0% | 92.0% |
| 4160542 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.82 | 71.0 | 7.22e-01 | 100.0% | 96.6% |
| 3941732 | 3115.6.1.0 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon | 0.79 | 56.0 | 6.03e-01 | 100.0% | 90.0% |
| 4886584 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.79 | 60.0 | 5.73e-01 | 100.0% | 70.0% |
| 4030871 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.78 | 60.0 | 5.70e-01 | 100.0% | 70.0% |
| 3227513 | 3115.1.1.3 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › NRF | 0.77 | 66.0 | 5.43e-01 | 100.0% | 53.3% |
| 3517068 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.76 | 68.0 | 6.60e-01 | 100.0% | 89.2% |
| 3508212 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.76 | 67.0 | 6.33e-01 | 100.0% | 82.9% |
| 3409700 | 4114.1.1.2 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus | 0.75 | 61.0 | 4.99e-01 | 100.0% | 47.8% |
| 3987406 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.74 | 64.0 | 5.94e-01 | 96.7% | 78.7% |
| 3551719 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.73 | 65.0 | 6.03e-01 | 100.0% | 78.7% |
| 1442666 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.72 | 64.0 | 5.79e-01 | 100.0% | 72.8% |
| 223776 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.71 | 58.0 | 5.52e-01 | 100.0% | 76.1% |
| 4008166 | 3115.1.1.10 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › PF27430 | 0.70 | 62.0 | 5.35e-01 | 100.0% | 64.2% |
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.66 | 57.0 | 5.62e-01 | 100.0% | 90.8% |
| 4332626 | 3532.1.1.0 ↗ | alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase | 0.66 | 57.0 | 3.29e-01 | 100.0% | 10.6% |
| 4948356 | 303.1.1.1 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC | 0.65 | 56.0 | 4.25e-01 | 100.0% | 41.3% |
| 4469636 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.65 | 55.0 | 4.90e-01 | 95.0% | 96.5% |
| 3287138 | 303.1.1.1 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC | 0.65 | 56.0 | 4.20e-01 | 100.0% | 43.9% |
| 4509594 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.63 | 53.0 | 4.82e-01 | 96.7% | 91.8% |
| 3284390 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.63 | 54.0 | 4.58e-01 | 100.0% | 80.0% |
| 4093790 | 304.28.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG | 0.62 | 50.0 | 4.54e-01 | 91.7% | 97.6% |
| 3338688 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 53.0 | 5.19e-01 | 100.0% | 95.4% |
| 3286853 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.60 | 51.0 | 4.69e-01 | 100.0% | 100.0% |
| 4498351 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.59 | 48.0 | 4.02e-01 | 98.3% | 98.3% |
| 4216562 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.59 | 49.0 | 4.36e-01 | 96.7% | 90.0% |
| 5040129 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.58 | 48.0 | 4.28e-01 | 100.0% | 82.1% |
| 3478889 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 49.0 | 3.71e-01 | 100.0% | 55.6% |
| 3300115 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.57 | 47.0 | 4.01e-01 | 95.0% | 75.2% |
| 3958896 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.57 | 39.0 | 3.95e-01 | 93.3% | 75.0% |
| 3919532 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.55 | 44.0 | 3.78e-01 | 100.0% | 51.8% |
| 3288688 | 304.43.1.1 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 › DUF503 | 0.55 | 45.0 | 4.03e-01 | 100.0% | 95.8% |
| 3742058 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.55 | 40.0 | 2.47e-01 | 85.0% | 15.7% |
| 3211800 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 48.0 | 4.23e-01 | 100.0% | 66.7% |
| 4867394 | 3820.1.1.1 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI | 0.54 | 46.0 | 4.00e-01 | 100.0% | 100.0% |
| 1692385 | 2492.1.1.23 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NAD2 | 0.54 | 45.0 | 3.31e-01 | 100.0% | 33.2% |
| 3577596 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.54 | 44.0 | 3.47e-01 | 100.0% | 77.9% |
| 3952812 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.53 | 40.0 | 3.63e-01 | 85.0% | 88.9% |
| 3720349 | 4176.1.1.2 ↗ | a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N | 0.53 | 42.0 | 2.81e-01 | 88.3% | 51.5% |
| 5048300 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 41.0 | 3.63e-01 | 98.3% | 75.2% |
| 3789211 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.52 | 44.0 | 3.79e-01 | 100.0% | 77.0% |
| 4603561 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.51 | 40.0 | 3.76e-01 | 93.3% | 91.3% |