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NC_031091.1__YP_009289279.1__BI094_gp51__00051

Bact-Vir

NC_031091.1__YP_009289279.1__BI094_gp51__00051

Identity

Accession:
NC_031091 ↗
Kingdom:
phage

Quality

82.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_MD8

TaxID: 1868596

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-142
PDB
Domain cluster: representative
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF13560.13 best HTH_31 46.2 6.50e-12 57.6% 87.5%
PF12844.14 HTH_19 33.5 4.40e-08 57.6% 89.1%
PF01381.29 HTH_3 45.3 1.00e-11 51.9% 96.4%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 50.0 5.58e-01 70.8% 97.5%
3cecA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 49.0 5.24e-01 70.8% 90.1%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 50.0 5.42e-01 96.2% 98.9%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 48.0 4.63e-01 95.3% 97.5%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.54 37.0 3.69e-01 70.8% 89.5%
3fhdA01 1.20.120.860 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain 0.53 39.0 3.71e-01 79.2% 80.9%
2np5D00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 41.0 3.63e-01 95.3% 57.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
381796 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.87 80.0 7.34e-01 97.2% 77.9%
4335698 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.74 54.0 5.88e-01 75.5% 95.6%
3283172 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 61.0 4.50e-01 88.7% 52.5%
4212800 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.72 49.0 4.96e-01 70.8% 75.0%
430036 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.71 48.0 5.15e-01 70.8% 87.0%
3180596 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.70 50.0 5.58e-01 73.6% 97.6%
4675105 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.69 53.0 5.90e-01 80.2% 100.0%
4632225 101.1.4.27 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N 0.69 51.0 5.66e-01 76.4% 98.8%