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NC_031100.1__YP_009289934.1__BI003_gp055__00055
Bact-VirNC_031100.1__YP_009289934.1__BI003_gp055__00055
Identity
- Accession:
- NC_031100 ↗
- Kingdom:
- phage
Quality
79.6
mean pLDDT
Taxonomy
TaxID: 1805953
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-66
Domain cluster:
rep: OM728297.1__WCS68260.1__Goe21_01500__00150__D10-75
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.80 | 65.0 | 6.15e-01 | 87.7% | 80.3% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.78 | 62.0 | 5.90e-01 | 86.2% | 80.3% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.70 | 50.0 | 5.47e-01 | 84.6% | 100.0% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.70 | 52.0 | 4.58e-01 | 81.5% | 60.2% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.68 | 52.0 | 4.41e-01 | 83.1% | 57.8% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.68 | 53.0 | 4.66e-01 | 84.6% | 61.5% |
| 2hlcA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 52.0 | 4.50e-01 | 93.8% | 52.9% |
| 5eh1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 52.0 | 4.58e-01 | 93.8% | 57.9% |
| 1konA02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.66 | 44.0 | 3.99e-01 | 75.4% | 50.0% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 47.0 | 4.38e-01 | 93.8% | 58.6% |
| 2pstX00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.65 | 39.0 | 4.00e-01 | 90.8% | 62.3% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.64 | 48.0 | 4.17e-01 | 84.6% | 51.4% |
| 2d7nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 45.0 | 4.34e-01 | 95.4% | 64.9% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.62 | 42.0 | 3.83e-01 | 75.4% | 52.9% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.61 | 53.0 | 3.96e-01 | 100.0% | 66.3% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.61 | 50.0 | 4.12e-01 | 100.0% | 51.3% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.61 | 52.0 | 4.61e-01 | 96.9% | 90.6% |
| 2dlgA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 43.0 | 4.03e-01 | 93.8% | 62.5% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.60 | 50.0 | 3.95e-01 | 95.4% | 63.4% |
| 4b7lA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 43.0 | 3.82e-01 | 95.4% | 51.0% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 42.0 | 4.27e-01 | 93.8% | 75.8% |
| 1i9gA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.59 | 41.0 | 4.19e-01 | 73.8% | 90.6% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.57 | 48.0 | 4.09e-01 | 100.0% | 75.0% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 42.0 | 3.76e-01 | 93.8% | 54.2% |
| 5jtwA03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 46.0 | 3.82e-01 | 93.8% | 60.6% |
| 3pjyA00 | 2.60.120.1140 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 | 0.57 | 47.0 | 3.80e-01 | 93.8% | 95.3% |
| 1xvsA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.56 | 46.0 | 3.82e-01 | 93.8% | 55.3% |
| 2pwyA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.56 | 39.0 | 4.13e-01 | 72.3% | 100.0% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 49.0 | 4.60e-01 | 100.0% | 89.9% |
| 5fljA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 35.0 | 2.58e-01 | 80.0% | 23.1% |
| 4c91A04 | 2.60.120.1620 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 47.0 | 3.43e-01 | 96.9% | 57.1% |
| 3i6sA03 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.55 | 43.0 | 3.51e-01 | 87.7% | 100.0% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.55 | 45.0 | 3.43e-01 | 93.8% | 92.8% |
| 1a21A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 44.0 | 3.96e-01 | 93.8% | 62.2% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.55 | 44.0 | 3.64e-01 | 93.8% | 54.2% |
| 3rj2X00 | 2.60.120.1150 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 3.65e-01 | 93.8% | 59.4% |
| 3bh1A03 | 3.40.140.40 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain | 0.54 | 45.0 | 3.54e-01 | 95.4% | 88.4% |
| 2pnqA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.54 | 44.0 | 2.87e-01 | 100.0% | 84.0% |
| 4xuoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 41.0 | 3.18e-01 | 89.2% | 35.3% |
| 2gu1A02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 41.0 | 3.56e-01 | 86.2% | 93.3% |
| 4jzjC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 3.71e-01 | 93.8% | 57.7% |
| 3liuA01 | 2.60.40.3160 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 45.0 | 3.78e-01 | 100.0% | 57.6% |
| 2mlbA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 42.0 | 3.98e-01 | 92.3% | 83.5% |
| 3h8hA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 42.0 | 3.89e-01 | 100.0% | 90.2% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.51 | 43.0 | 3.94e-01 | 100.0% | 90.2% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.50 | 43.0 | 3.91e-01 | 100.0% | 88.3% |
| 1wmhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 43.0 | 4.06e-01 | 100.0% | 91.6% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.86 | 64.0 | 6.88e-01 | 78.5% | 98.2% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.84 | 63.0 | 6.64e-01 | 78.5% | 96.6% |
| 5013194 | 3115.4.1.0 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 | 0.83 | 60.0 | 6.44e-01 | 75.4% | 100.0% |
| 4463006 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.77 | 50.0 | 5.78e-01 | 75.4% | 95.6% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.77 | 50.0 | 5.78e-01 | 80.0% | 97.8% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.77 | 50.0 | 5.78e-01 | 80.0% | 97.8% |
| 3968122 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.76 | 49.0 | 5.61e-01 | 78.5% | 95.6% |
| 4007508 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.75 | 50.0 | 5.50e-01 | 84.6% | 90.0% |
| 5015713 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.73 | 54.0 | 5.58e-01 | 76.9% | 96.7% |
| 3287357 | 3115.3.1.0 ↗ | a+b two layers › GP2-like › P56 › P56 | 0.71 | 55.0 | 5.73e-01 | 81.5% | 94.9% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.69 | 46.0 | 5.39e-01 | 80.0% | 100.0% |
| 4281749 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.69 | 53.0 | 4.31e-01 | 83.1% | 49.2% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.69 | 49.0 | 5.31e-01 | 75.4% | 100.0% |
| 3503254 | 4007.1.1.0 ↗ | a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins | 0.69 | 46.0 | 4.20e-01 | 73.8% | 53.6% |
| 4997210 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.68 | 58.0 | 5.20e-01 | 93.8% | 91.1% |
| 3607227 | 4012.3.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 | 0.68 | 47.0 | 5.26e-01 | 73.8% | 98.0% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.67 | 60.0 | 5.38e-01 | 100.0% | 97.8% |
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.67 | 52.0 | 4.18e-01 | 83.1% | 50.4% |
| 3942510 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.66 | 58.0 | 5.13e-01 | 100.0% | 89.5% |
| 3409700 | 4114.1.1.2 ↗ | a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus | 0.66 | 55.0 | 4.72e-01 | 100.0% | 86.1% |
| 3600531 | 4012.3.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 | 0.65 | 49.0 | 5.32e-01 | 89.2% | 100.0% |
| 4968352 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.64 | 48.0 | 4.49e-01 | 83.1% | 67.1% |
| 4954768 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 44.0 | 4.08e-01 | 95.4% | 56.5% |
| 4583560 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 41.0 | 4.77e-01 | 78.5% | 100.0% |
| 4969269 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 48.0 | 4.25e-01 | 93.8% | 57.0% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.61 | 46.0 | 2.96e-01 | 86.2% | 18.9% |
| 2640865 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 44.0 | 4.70e-01 | 81.5% | 94.5% |
| 332272 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.60 | 50.0 | 3.95e-01 | 95.4% | 63.4% |
| 3273902 | 11.1.1.12 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin | 0.59 | 42.0 | 3.62e-01 | 95.4% | 44.3% |
| 4039738 | 284.1.1.4 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB | 0.59 | 48.0 | 4.46e-01 | 87.7% | 83.7% |
| 3289401 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.58 | 51.0 | 4.11e-01 | 100.0% | 66.9% |
| 5057619 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.57 | 50.0 | 3.42e-01 | 100.0% | 47.5% |
| 3344184 | 11.1.1.652 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd | 0.57 | 45.0 | 3.63e-01 | 93.8% | 42.8% |
| 3783481 | 11.1.1.642 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 | 0.56 | 47.0 | 3.91e-01 | 95.4% | 64.2% |
| 3958896 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.56 | 37.0 | 3.86e-01 | 73.8% | 75.0% |
| 3420298 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.56 | 44.0 | 3.45e-01 | 87.7% | 100.0% |
| 1117738 | 10.32.1.52 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GH115_C | 0.55 | 48.0 | 3.45e-01 | 96.9% | 57.4% |
| 3187671 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 42.0 | 4.30e-01 | 95.4% | 91.7% |
| 3790328 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.55 | 37.0 | 2.51e-01 | 70.8% | 68.4% |
| 2324048 | 1185.1.1.1 ↗ | a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › DUF6911 | 0.55 | 46.0 | 3.73e-01 | 98.5% | 52.9% |
| 3966288 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 42.0 | 3.57e-01 | 93.8% | 48.7% |
| 3244077 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.55 | 41.0 | 4.29e-01 | 95.4% | 91.7% |
| 4970434 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.52 | 39.0 | 3.47e-01 | 81.5% | 56.7% |
| 3596155 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 40.0 | 3.36e-01 | 84.6% | 100.0% |