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NC_031107.2__YP_009290646.1__ASESINO_28__00016

Bact-Vir

NC_031107.2__YP_009290646.1__ASESINO_28__00016

Identity

Accession:
NC_031107 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Erskinevirus› Erwinia_phage_vB_EamM_Asesino

TaxID: 1883370

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-112
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mo1A00 1.10.274.110 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.73 55.0 5.08e-01 80.2% 93.1%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.67 54.0 5.02e-01 85.6% 75.5%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.66 48.0 5.30e-01 79.3% 97.7%
2dodA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.65 40.0 4.52e-01 75.7% 82.9%
4is7A02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.64 39.0 4.71e-01 91.0% 93.1%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 42.0 4.22e-01 97.3% 65.2%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 42.0 4.27e-01 79.3% 68.9%
1aroP05 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.63 57.0 4.61e-01 99.1% 97.6%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.63 27.0 3.45e-01 79.3% 66.7%
2j0jA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.61 42.0 4.10e-01 70.3% 69.7%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 45.0 4.84e-01 78.4% 98.9%
6zd1A01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.60 52.0 4.69e-01 97.3% 69.4%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 42.0 3.99e-01 79.3% 60.9%
3awmA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.59 51.0 3.51e-01 97.3% 67.1%
1ohuA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.58 42.0 3.74e-01 76.6% 60.6%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 40.0 3.52e-01 83.8% 49.1%
1ungE00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 41.0 3.72e-01 80.2% 55.1%
3mdmA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 48.0 3.26e-01 95.5% 69.9%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.55 33.0 2.95e-01 73.0% 42.2%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.55 44.0 4.09e-01 87.4% 70.8%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.54 38.0 3.80e-01 82.9% 70.5%
2r4gA01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.54 47.0 4.05e-01 98.2% 66.7%
5hn9C00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 47.0 3.42e-01 100.0% 62.6%
2vvyA01 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.53 35.0 3.32e-01 78.4% 54.5%
4at7B01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.53 41.0 3.93e-01 83.8% 78.9%
3mzvA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 45.0 3.33e-01 98.2% 53.4%
5dykA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 41.0 3.99e-01 86.5% 84.7%
3venA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 38.0 3.06e-01 80.2% 100.0%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 43.0 3.63e-01 93.7% 94.2%
3lysA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.51 40.0 4.09e-01 88.3% 88.6%
2gl5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 42.0 4.05e-01 94.6% 96.2%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3289364 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.72 59.0 5.29e-01 86.5% 75.3%
4025261 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 56.0 5.67e-01 95.5% 85.5%
3594142 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 50.0 5.19e-01 93.7% 86.7%
3542152 397.7.1.7 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › BSMAP 0.65 49.0 5.33e-01 80.2% 100.0%
3534849 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.64 46.0 4.55e-01 80.2% 70.4%
3963433 131.1.1.15 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › Ppx-GppA_III 0.64 51.0 4.18e-01 83.8% 82.1%
4926899 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.63 55.0 5.37e-01 94.6% 100.0%
4254695 1037.1.1.1 ↗ alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.61 55.0 4.16e-01 99.1% 82.3%
3606860 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.61 54.0 5.24e-01 97.3% 90.4%
4965013 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.59 42.0 3.37e-01 83.8% 36.4%
3985471 131.2.1.0 ↗ alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like 0.58 46.0 3.90e-01 82.9% 75.0%
4367450 1037.1.1.1 ↗ alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.57 50.0 3.91e-01 100.0% 82.8%
5027340 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.56 40.0 4.40e-01 82.0% 92.2%
3428503 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.55 39.0 3.15e-01 72.1% 92.7%
3412630 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.55 46.0 4.33e-01 95.5% 74.1%
3902312 3651.1.1.1 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B 0.55 39.0 3.60e-01 73.0% 75.2%
3962121 4040.1.1.0 ↗ alpha bundles › Fic-like › Fic-like › Fic-like 0.55 42.0 4.29e-01 82.9% 95.2%
3642887 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.54 38.0 3.07e-01 73.0% 49.1%
3714124 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 41.0 3.77e-01 91.9% 61.4%
3515204 4156.1.1.11 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N 0.54 46.0 3.64e-01 93.7% 59.1%
3801560 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 46.0 3.43e-01 95.5% 70.7%
3719289 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.54 46.0 4.33e-01 97.3% 78.5%
3277460 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.54 40.0 3.12e-01 78.4% 78.0%
5064618 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.53 35.0 3.25e-01 73.0% 52.9%
5053405 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.51 46.0 3.55e-01 99.1% 50.8%
3740385 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.51 43.0 3.79e-01 94.6% 77.6%
3723427 5050.1.1.12 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › TRI12 0.51 41.0 3.00e-01 87.4% 86.8%
3727859 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.50 43.0 3.31e-01 94.6% 66.8%
4602079 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.50 38.0 3.10e-01 81.1% 90.2%
3726235 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.50 40.0 3.21e-01 85.6% 85.3%
3737247 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.50 44.0 3.50e-01 95.5% 72.7%