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NC_031107.2__YP_009290723.1__ASESINO_105__00093

Bact-Vir

NC_031107.2__YP_009290723.1__ASESINO_105__00093

Identity

Accession:
NC_031107 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Erskinevirus› Erwinia_phage_vB_EamM_Asesino

TaxID: 1883370

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-49
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 47.0 5.05e-01 85.4% 89.7%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.68 60.0 5.18e-01 100.0% 71.1%
3ksrA01 6.20.370.100 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.68 38.0 4.25e-01 100.0% 100.0%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.65 54.0 4.22e-01 100.0% 77.8%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 53.0 4.80e-01 95.8% 80.6%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.62 46.0 3.54e-01 100.0% 34.5%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.60 49.0 3.56e-01 100.0% 31.5%
4emeC02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.60 52.0 3.80e-01 100.0% 65.9%
2hw0A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.58 46.0 3.68e-01 97.9% 63.5%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 48.0 3.40e-01 100.0% 39.2%
7whfC02 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 41.0 3.43e-01 100.0% 41.0%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.73e-01 100.0% 89.0%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 45.0 3.16e-01 97.9% 37.6%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.12e-01 100.0% 70.4%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 42.0 3.11e-01 97.9% 59.2%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 41.0 3.33e-01 93.8% 58.7%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 45.0 2.79e-01 100.0% 22.8%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.51 43.0 3.55e-01 100.0% 52.7%
1mzkA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 39.0 3.13e-01 95.8% 97.5%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.51 38.0 3.15e-01 89.6% 82.9%
1fi2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 39.0 2.70e-01 100.0% 21.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4084879 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.78 70.0 5.73e-01 100.0% 68.2%
4128974 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.70 62.0 5.22e-01 100.0% 72.5%
4648475 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.69 60.0 5.62e-01 100.0% 98.3%
3546790 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.69 58.0 4.14e-01 100.0% 73.5%
4967222 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.69 61.0 5.67e-01 100.0% 90.0%
3217805 386.1.1.366 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › BPTI_nem 0.68 51.0 4.37e-01 91.7% 50.0%
4937773 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 60.0 5.63e-01 100.0% 93.1%
4939739 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 57.0 5.38e-01 100.0% 91.5%
4179225 807.1.1.0 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) 0.63 54.0 5.33e-01 100.0% 92.0%
5055801 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.63 51.0 5.00e-01 97.9% 83.0%
3290973 1.1.7.15 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M18 0.61 52.0 3.98e-01 100.0% 70.0%
5052801 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.61 52.0 4.17e-01 100.0% 95.0%
3406669 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 3.82e-01 100.0% 44.0%
3409700 4114.1.1.2 ↗ a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus 0.60 52.0 3.99e-01 100.0% 46.1%
4408923 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 3.40e-01 93.8% 41.9%
4004815 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.58 49.0 3.70e-01 97.9% 56.9%
3587863 3158.1.1.1 ↗ beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF5348 0.58 48.0 4.09e-01 97.9% 64.7%
4810251 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.57 45.0 2.99e-01 100.0% 23.7%
3453549 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 46.0 3.62e-01 97.9% 60.9%
3834112 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 45.0 3.87e-01 93.8% 95.0%
3574589 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 40.0 3.86e-01 95.8% 74.5%
3900025 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 43.0 3.95e-01 100.0% 91.4%
D2 high residues 69-156
PDB
Domain cluster: rep: MW760841.1__QVW28605.1__pEaSNUABM8_00108__00095__D3-68