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NC_031107.2__YP_009290786.1__ASESINO_168__00156

Bact-Vir

NC_031107.2__YP_009290786.1__ASESINO_168__00156

Identity

Accession:
NC_031107 ↗
Kingdom:
phage

Quality

74.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Erskinevirus› Erwinia_phage_vB_EamM_Asesino

TaxID: 1883370

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-73
PDB
Domain cluster: rep: LR881104.1__CAD5236217.1__LLCLJKAH_00228__00228__D12-71
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25613.2 best DUF7941 27.6 2.70e-06 100.0% 23.4%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 46.0 4.54e-01 100.0% 64.8%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 44.0 4.18e-01 100.0% 58.0%
1ne3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 43.0 4.27e-01 75.8% 66.2%
3nppA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.62 40.0 3.74e-01 78.8% 50.6%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.59 46.0 3.85e-01 90.9% 96.2%
2dkhA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 52.0 3.49e-01 100.0% 83.7%
4l3aA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 4.29e-01 98.5% 71.2%
2pd0A01 3.30.2310.50 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Protein of unknown function (DUF3228), domain 1 0.57 49.0 4.10e-01 100.0% 65.8%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 3.65e-01 77.3% 60.9%
7bspA01 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.55 46.0 3.66e-01 100.0% 69.1%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 4.04e-01 100.0% 80.7%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 37.0 3.25e-01 72.7% 65.7%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 3.98e-01 100.0% 79.5%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.54 36.0 3.50e-01 100.0% 60.5%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.52 45.0 3.82e-01 98.5% 58.7%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.52 45.0 3.70e-01 100.0% 96.0%
1flgA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.51 44.0 2.60e-01 100.0% 12.0%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 43.0 2.74e-01 98.5% 23.2%
4a27A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.51 40.0 3.15e-01 90.9% 82.9%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.51 40.0 3.74e-01 100.0% 69.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930846 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.68 44.0 4.56e-01 72.7% 71.7%
3172156 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.68 45.0 3.84e-01 75.8% 42.9%
3210879 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.64 45.0 5.10e-01 74.2% 98.0%
5037223 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.64 41.0 4.32e-01 75.8% 73.3%
5025077 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.63 49.0 5.08e-01 100.0% 95.0%
4033429 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.62 45.0 4.23e-01 100.0% 62.5%
3447383 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.62 51.0 3.18e-01 89.4% 23.6%
4505258 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 48.0 4.02e-01 89.4% 48.7%
5000502 2.1.1.12 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.62 42.0 3.94e-01 74.2% 56.5%
5068131 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.59 46.0 4.08e-01 83.3% 57.9%
3604630 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.57 40.0 2.93e-01 74.2% 88.6%
3416718 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.57 41.0 4.28e-01 89.4% 81.7%
3619203 211.1.1.29 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Chromadorea_ALT 0.57 39.0 4.38e-01 97.0% 96.0%
5023683 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.57 40.0 2.96e-01 74.2% 88.0%
2137686 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.55 47.0 3.81e-01 98.5% 88.8%
3965187 814.1.1.2 ↗ a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.55 46.0 3.66e-01 100.0% 83.3%
6395 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.54 47.0 3.84e-01 100.0% 70.1%
3399965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 44.0 3.98e-01 93.9% 66.7%
4950859 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 45.0 3.77e-01 97.0% 66.7%
3605788 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.52 44.0 3.57e-01 100.0% 93.6%
3589853 236.1.1.2 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N,ADH_zinc_N_2 0.52 41.0 3.26e-01 90.9% 60.0%
3596991 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.52 39.0 3.30e-01 86.4% 66.1%
152844 243.3.1.8 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3889 0.51 40.0 3.74e-01 100.0% 69.0%
4931272 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.51 41.0 3.78e-01 97.0% 68.4%
3778489 708.1.2.3 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.50 40.0 3.41e-01 92.4% 53.3%
D2 high residues 75-157
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25613.2 best DUF7941 42.7 6.60e-11 97.6% 28.4%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.56 42.0 3.28e-01 79.5% 83.7%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 4.06e-01 90.4% 87.6%
5nthA01 3.40.50.10590 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Zn-dependent exopeptidases 0.54 39.0 3.09e-01 96.4% 33.3%
7jrmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 4.52e-01 100.0% 100.0%
7cymA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 45.0 4.12e-01 95.2% 100.0%
1ajwA00 2.70.50.30 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › Coagulation Factor XIII, subunit A, domain 1 0.52 46.0 3.85e-01 100.0% 91.7%
2q2gB01 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.52 39.0 4.17e-01 86.7% 100.0%
4depC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 4.00e-01 92.8% 96.1%
5cyxA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 41.0 4.17e-01 88.0% 100.0%
1zvnA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 40.0 3.91e-01 85.5% 100.0%
4zi8B01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 44.0 4.15e-01 100.0% 100.0%
4zi9A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 41.0 3.99e-01 90.4% 100.0%
1ryaA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 41.0 3.38e-01 89.2% 75.6%
1l3wA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 45.0 4.09e-01 100.0% 95.6%
4ys4A02 2.60.40.2860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.89e-01 98.8% 95.3%
7cymA04 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 40.0 3.82e-01 85.5% 100.0%
2pkdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.80e-01 90.4% 100.0%
4kc3B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 43.0 4.17e-01 97.6% 100.0%
3nqkA01 2.60.40.1740 Mainly Beta › Sandwich › Immunoglobulin-like › hypothetical protein (bacova_03559) 0.50 43.0 3.66e-01 98.8% 97.9%
3o4oC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 43.0 4.00e-01 98.8% 100.0%
4gafB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.94e-01 96.4% 99.1%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4197431 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 50.0 5.28e-01 88.0% 100.0%
3589294 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.55 47.0 4.82e-01 100.0% 100.0%
3994298 11.1.1.1018 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7505 0.53 45.0 4.34e-01 96.4% 93.7%
3921279 11.1.1.115 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_pro 0.53 45.0 4.28e-01 95.2% 97.0%
5030266 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 4.18e-01 100.0% 89.1%
4517191 11.1.1.115 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_pro 0.52 44.0 4.26e-01 96.4% 95.8%
4948928 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 4.41e-01 96.4% 97.8%
3492766 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.95e-01 96.4% 98.2%
3501369 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 4.01e-01 98.8% 89.1%
3475486 2004.1.1.132 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DLIC 0.51 44.0 3.04e-01 98.8% 34.7%
3525593 11.1.1.115 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_pro 0.50 43.0 3.93e-01 96.4% 81.8%
322632 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.82e-01 92.8% 100.0%
3242981 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.95e-01 96.4% 87.6%
3582007 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.98e-01 90.4% 98.9%
D3 high residues 167-379
PDB
Domain cluster: rep: MF042360.1__ARV76757.1__PHABIO_126__00126__D266-410_423-439_494-513
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.68 19.0 3.38e-01 96.7% 73.2%
5cenA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 23.0 3.69e-01 96.7% 88.5%
5lohB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 22.0 3.61e-01 96.7% 89.2%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 24.0 3.13e-01 100.0% 65.5%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 25.0 3.53e-01 96.2% 90.8%
3lzhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 23.0 3.36e-01 96.2% 83.5%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 24.0 3.28e-01 100.0% 78.7%
3f3fD01 2.20.25.500 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 14.0 2.67e-01 88.7% 86.3%
2nryD01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 22.0 3.18e-01 96.2% 87.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014687 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 18.0 3.05e-01 90.1% 98.5%
D4 medium residues 403-509
PDB