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NC_031107.2__YP_009290813.1__ASESINO_195__00183

Bact-Vir

NC_031107.2__YP_009290813.1__ASESINO_195__00183

Identity

Accession:
NC_031107 ↗
Kingdom:
phage

Quality

62.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-141
PDB
D2 high residues 150-213
PDB
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mw7A03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.73 49.0 4.65e-01 81.2% 58.7%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 44.0 4.31e-01 75.0% 57.1%
3cjsA00 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.70 42.0 4.36e-01 76.6% 65.5%
4kr6A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.69 49.0 3.59e-01 79.7% 28.1%
2dgtA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 43.0 4.12e-01 81.2% 56.2%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.67 49.0 4.53e-01 78.1% 65.1%
2cpdA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 43.0 4.09e-01 81.2% 57.3%
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.64 47.0 3.79e-01 81.2% 42.7%
5jpnC01 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.62 52.0 4.10e-01 100.0% 44.4%
1sw2A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 53.0 3.94e-01 95.3% 42.8%
4pwuC00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 42.0 4.02e-01 81.2% 60.3%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 42.0 4.11e-01 76.6% 66.7%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 40.0 3.84e-01 76.6% 58.7%
3sqnB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.80e-01 100.0% 93.4%
3h0dA01 3.30.56.130 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Transcriptional regulator CtsR, winged HTH domain 0.60 51.0 4.99e-01 100.0% 94.4%
3cu7A12 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.60 52.0 4.08e-01 100.0% 45.7%
3ssmC02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 51.0 3.65e-01 100.0% 37.4%
3oreA01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 42.0 4.17e-01 82.8% 72.7%
3v8hC00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.59 48.0 3.17e-01 92.2% 65.6%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.59 43.0 3.27e-01 81.2% 32.7%
1d1rA00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.58 43.0 4.05e-01 95.3% 63.9%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.07e-01 100.0% 61.7%
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.56 39.0 3.74e-01 93.8% 63.0%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 43.0 4.02e-01 95.3% 65.1%
4i68A00 3.30.70.1800 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 3.83e-01 82.8% 62.2%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 4.00e-01 100.0% 72.7%
3jtgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 4.19e-01 100.0% 92.9%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.46e-01 100.0% 50.0%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 4.05e-01 100.0% 68.9%
3f6oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.67e-01 100.0% 60.4%
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.53 46.0 4.43e-01 96.9% 94.4%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.66e-01 100.0% 60.2%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.36e-01 100.0% 42.1%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.75e-01 100.0% 63.3%
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.52 45.0 3.54e-01 100.0% 45.4%
1jg5A00 3.30.1410.10 Alpha Beta › 2-Layer Sandwich › Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K › GTP cyclohydrolase I feedback regulatory protein GFRP 0.52 40.0 3.72e-01 84.4% 97.6%
1xviA02 3.30.980.20 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 0.52 45.0 4.02e-01 100.0% 81.9%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 4.00e-01 100.0% 78.6%
2lycA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.52 43.0 3.55e-01 100.0% 72.3%
4y66F01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.95e-01 100.0% 86.4%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.98e-01 100.0% 76.2%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 44.0 3.32e-01 100.0% 91.9%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.51 39.0 3.69e-01 95.3% 67.9%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.63e-01 100.0% 60.2%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.72e-01 100.0% 76.8%
2oqgB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.34e-01 100.0% 50.9%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 44.0 4.00e-01 100.0% 79.3%
1kgdA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.51 35.0 3.67e-01 81.2% 78.3%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 4.11e-01 100.0% 95.3%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.80e-01 100.0% 73.2%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937548 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.73 43.0 4.63e-01 76.6% 69.1%
3386186 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.72 42.0 3.83e-01 78.1% 43.5%
3590646 101.1.2.16 alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.69 59.0 4.86e-01 100.0% 72.0%
3266992 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.66 55.0 5.50e-01 100.0% 93.8%
4886196 4988.1.1.1 a+b two layers › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal protein S8, C-terminal domain › Ribosomal_S8 0.64 49.0 5.22e-01 100.0% 96.4%
4027905 320.2.1.0 a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain 0.62 47.0 5.02e-01 100.0% 96.4%
3588365 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 4.60e-01 100.0% 68.2%
4101334 304.28.1.3 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD-TM1 0.62 44.0 3.95e-01 84.4% 53.3%
4362064 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.61 38.0 3.73e-01 79.7% 55.7%
3344177 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.61 39.0 4.46e-01 81.2% 93.3%
4004813 304.28.1.3 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD-TM1 0.61 42.0 3.80e-01 82.8% 50.5%
3587571 101.1.2.93 alpha arrays › HTH › HTH › winged helix domain › HTH_Mga 0.60 48.0 4.72e-01 100.0% 84.3%
3590297 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 4.31e-01 100.0% 61.0%
4954889 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.59 46.0 4.62e-01 100.0% 87.7%
3644483 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.59 50.0 3.32e-01 100.0% 23.1%
3320712 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.59 50.0 3.66e-01 100.0% 34.9%
1147791 101.1.2.87 alpha arrays › HTH › HTH › winged helix domain › PaaX 0.58 43.0 3.80e-01 84.4% 75.7%
4011761 304.7.1.3 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Pro-kuma_activ 0.58 50.0 3.74e-01 98.4% 61.9%
3589189 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.88e-01 100.0% 52.8%
4946714 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.55 41.0 3.79e-01 84.4% 81.1%
3603379 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.84e-01 100.0% 65.0%
169596 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.55 42.0 3.74e-01 100.0% 56.7%
5037249 101.1.2.128 alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.55 43.0 3.96e-01 100.0% 65.9%
3946945 101.1.2.274 alpha arrays › HTH › HTH › winged helix domain › SgrR_N 0.55 44.0 3.10e-01 100.0% 26.1%
4976918 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 4.12e-01 100.0% 68.9%
3699569 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 4.03e-01 100.0% 71.8%
4977903 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 4.30e-01 100.0% 87.5%
4969546 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 4.07e-01 100.0% 73.8%
3501875 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 44.0 3.71e-01 100.0% 53.1%
5028531 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.92e-01 100.0% 66.7%
3782579 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.53 40.0 3.28e-01 100.0% 40.7%
5050343 101.1.2.891 alpha arrays › HTH › HTH › winged helix domain › UBA_3 0.52 41.0 3.96e-01 100.0% 77.3%
4927192 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.67e-01 100.0% 61.1%
5029366 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.84e-01 100.0% 69.4%
4026717 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 4.20e-01 100.0% 90.0%
4142054 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 40.0 3.33e-01 100.0% 45.6%
4948576 101.1.2.37 alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.52 41.0 4.11e-01 100.0% 92.3%
3595354 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.31e-01 100.0% 42.1%
4068860 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.51 39.0 3.36e-01 100.0% 47.5%
3169812 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.51 42.0 3.32e-01 100.0% 41.2%
5021801 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.98e-01 100.0% 80.0%
5031076 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.51 42.0 3.56e-01 100.0% 53.0%
5012106 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.51 42.0 3.39e-01 100.0% 45.2%
4963651 101.1.2.926 alpha arrays › HTH › HTH › winged helix domain › DUF7346 0.51 40.0 3.70e-01 100.0% 67.1%
3951002 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.51 41.0 3.37e-01 100.0% 45.2%
4028116 101.1.2.82 alpha arrays › HTH › HTH › winged helix domain › TBPIP 0.51 41.0 3.78e-01 100.0% 69.4%
4979180 101.1.2.37 alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.51 40.0 3.40e-01 100.0% 48.8%
3587913 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.51 40.0 3.35e-01 100.0% 46.2%
4983659 101.1.2.650 alpha arrays › HTH › HTH › winged helix domain › DUF7343 0.51 39.0 3.54e-01 100.0% 59.2%
2601 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.50 40.0 3.80e-01 100.0% 73.2%
5036590 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 40.0 3.47e-01 100.0% 53.0%
5027056 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 40.0 3.63e-01 100.0% 64.4%
3257129 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.50 41.0 3.50e-01 100.0% 52.5%
4033416 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.50 38.0 3.76e-01 93.8% 75.7%
4952681 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 42.0 4.00e-01 100.0% 81.2%