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NC_031108.1__YP_009290910.1__BI041_gp03__00003
Bact-VirNC_031108.1__YP_009290910.1__BI041_gp03__00003
Identity
- Accession:
- NC_031108 ↗
- Kingdom:
- phage
Quality
77.9
mean pLDDT
Taxonomy
TaxID: 1838138
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-206
Domain cluster:
rep: KC821618.1__AGO48403.1__Phi10-1_gp062__00062__D33-74_121-234_364-393
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04860.18 best | Phage_portal | 54.2 | 1.80e-14 | 75.0% | 40.2% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 19.0 | 3.33e-01 | 89.4% | 73.0% |
| 2efiA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 22.0 | 3.02e-01 | 79.8% | 55.0% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 24.0 | 3.89e-01 | 79.8% | 88.9% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 22.0 | 3.68e-01 | 86.7% | 90.3% |
| 2qkdA03 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.60 | 16.0 | 3.11e-01 | 84.6% | 82.4% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.60 | 14.0 | 3.08e-01 | 81.4% | 97.3% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 17.0 | 2.83e-01 | 88.8% | 68.1% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 25.0 | 3.79e-01 | 89.4% | 100.0% |
| 1v1cA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 22.0 | 3.52e-01 | 86.7% | 98.5% |
| 2i2lA01 | 2.10.70.50 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.55 | 19.0 | 3.20e-01 | 79.3% | 100.0% |
| 8aimG01 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.54 | 20.0 | 2.95e-01 | 78.7% | 74.1% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.53 | 15.0 | 3.02e-01 | 85.1% | 95.8% |
| 3cuqA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 19.0 | 2.79e-01 | 82.4% | 71.2% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964370 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.72 | 31.0 | 4.65e-01 | 85.6% | 90.6% |
| 3942943 | 4056.1.1.1 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 | 0.72 | 61.0 | 5.43e-01 | 88.8% | 96.5% |
| 4345080 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 19.0 | 3.36e-01 | 89.4% | 70.8% |
| 4379563 | 375.1.1.289 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 | 0.66 | 17.0 | 3.58e-01 | 88.8% | 93.3% |
| 3230022 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 19.0 | 3.24e-01 | 95.7% | 70.0% |
| 3798312 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.66 | 24.0 | 3.95e-01 | 86.2% | 90.0% |
| 3233461 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 21.0 | 3.57e-01 | 79.3% | 100.0% |
| 146636 | 4.1.3.1 ↗ | beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › Calci_bind_CcbP | 0.57 | 25.0 | 3.03e-01 | 84.6% | 57.9% |
| 3796352 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.57 | 18.0 | 3.22e-01 | 86.2% | 84.6% |
| 3561094 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.56 | 22.0 | 3.32e-01 | 86.7% | 85.3% |
| 3585538 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.56 | 22.0 | 2.87e-01 | 80.9% | 61.0% |
| 3793962 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.56 | 21.0 | 2.94e-01 | 80.9% | 66.7% |
| 3616622 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 21.0 | 3.47e-01 | 80.9% | 100.0% |
| 3936565 | 220.4.1.0 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins | 0.55 | 23.0 | 3.63e-01 | 87.2% | 100.0% |
| 3410370 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 22.0 | 3.29e-01 | 80.9% | 90.0% |
| 5050697 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.55 | 16.0 | 3.31e-01 | 83.5% | 100.0% |
| 4150469 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.53 | 21.0 | 3.33e-01 | 97.3% | 92.0% |
| 4054729 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.52 | 18.0 | 2.87e-01 | 77.7% | 78.7% |
| 4261760 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.51 | 22.0 | 3.08e-01 | 78.2% | 80.0% |
D2
high
residues 487-659
Domain cluster:
rep: IMGVR_UViG_2529292733_000001-2529292733-2529763349__D7-188
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ljbA00 | 1.20.120.1240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Dynamin, middle domain | 0.67 | 61.0 | 5.70e-01 | 100.0% | 90.4% |
| 3nxcA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 41.0 | 4.16e-01 | 89.6% | 61.6% |
| 8sbeA02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.63 | 37.0 | 3.59e-01 | 89.0% | 50.8% |
| 2id6A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 42.0 | 4.47e-01 | 91.3% | 80.5% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.59 | 32.0 | 4.23e-01 | 79.8% | 94.8% |
| 2i10B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 38.0 | 4.34e-01 | 78.6% | 89.6% |
| 3emlA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 45.0 | 3.82e-01 | 84.4% | 49.3% |
| 7f16R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 42.0 | 3.60e-01 | 84.4% | 46.2% |
| 2hytA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 37.0 | 3.65e-01 | 94.2% | 58.0% |
| 3apzA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.57 | 40.0 | 3.29e-01 | 94.2% | 40.8% |
| 6j95A01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.56 | 47.0 | 3.52e-01 | 89.6% | 71.3% |
| 8h8jC01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 41.0 | 3.53e-01 | 78.0% | 47.2% |
| 6o7uc01 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.56 | 39.0 | 3.80e-01 | 85.5% | 63.2% |
| 7eptR01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.56 | 40.0 | 3.54e-01 | 82.7% | 49.2% |
| 1u7gA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.55 | 38.0 | 2.96e-01 | 72.8% | 31.6% |
| 5d1rB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 45.0 | 4.15e-01 | 90.2% | 66.8% |
| 2bl2A00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.54 | 36.0 | 3.83e-01 | 77.5% | 73.7% |
| 1r0dA00 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.53 | 42.0 | 4.12e-01 | 83.8% | 94.3% |
| 6k41R00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 35.0 | 3.18e-01 | 78.6% | 46.9% |
| 3uonA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 41.0 | 3.57e-01 | 84.4% | 50.9% |
| 7utzR02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 41.0 | 3.53e-01 | 81.5% | 77.3% |
| 1jr3C02 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.53 | 33.0 | 3.88e-01 | 74.0% | 89.3% |
| 2gs4A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 35.0 | 3.71e-01 | 88.4% | 73.4% |
| 5tgzA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 40.0 | 3.43e-01 | 84.4% | 47.3% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.52 | 32.0 | 3.69e-01 | 83.2% | 83.1% |
| 2cfoA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 29.0 | 3.54e-01 | 89.6% | 85.6% |
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.52 | 32.0 | 4.03e-01 | 90.8% | 100.0% |
| 3nftA00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.52 | 40.0 | 3.54e-01 | 91.9% | 53.1% |
| 6ko5A02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 41.0 | 3.51e-01 | 84.4% | 50.3% |
| 1xioA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 45.0 | 4.19e-01 | 94.8% | 88.9% |
| 4zudA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 37.0 | 3.30e-01 | 86.1% | 50.4% |
| 1eq1A00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.51 | 37.0 | 3.81e-01 | 91.9% | 78.3% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 31.0 | 3.48e-01 | 86.1% | 77.0% |
| 4ib4A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 38.0 | 3.33e-01 | 83.8% | 48.4% |
| 7xxiA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 39.0 | 3.31e-01 | 83.2% | 47.9% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3756948 | 601.19.1.17 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Niban2 | 0.73 | 64.0 | 6.53e-01 | 98.8% | 95.3% |
| 3875649 | 601.19.1.17 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Niban2 | 0.71 | 64.0 | 5.00e-01 | 100.0% | 47.0% |
| 3522682 | 601.19.1.17 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Niban2 | 0.70 | 64.0 | 5.59e-01 | 100.0% | 66.3% |
| 3674195 | 103.9.1.1 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain › WPP | 0.70 | 43.0 | 5.36e-01 | 80.3% | 100.0% |
| 5042297 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.65 | 55.0 | 5.39e-01 | 96.5% | 83.2% |
| 5050120 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.64 | 52.0 | 5.15e-01 | 94.8% | 82.7% |
| 3737705 | 605.4.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 | 0.60 | 34.0 | 4.36e-01 | 85.0% | 96.0% |
| 3885225 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.57 | 49.0 | 5.04e-01 | 93.6% | 95.8% |
| 3517245 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.57 | 45.0 | 3.77e-01 | 84.4% | 46.8% |
| 5079477 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.57 | 41.0 | 4.18e-01 | 74.6% | 78.3% |
| 3218445 | 5001.1.1.84 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srz | 0.56 | 40.0 | 3.41e-01 | 71.7% | 71.9% |
| 4941160 | 1075.5.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt | 0.55 | 43.0 | 4.17e-01 | 93.6% | 72.8% |
| 3205696 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.55 | 38.0 | 4.17e-01 | 80.9% | 88.9% |
| 3689634 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 46.0 | 4.24e-01 | 90.8% | 91.1% |
| None | — | 0.54 | 41.0 | 3.32e-01 | 80.9% | 38.3% | |
| 3811749 | 5076.2.1.9 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › Choline_transpo | 0.54 | 48.0 | 4.37e-01 | 99.4% | 87.9% |
| 4934635 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.54 | 43.0 | 3.80e-01 | 86.7% | 72.1% |
| 3731685 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.53 | 44.0 | 4.38e-01 | 89.0% | 93.0% |
| 3291650 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.53 | 46.0 | 3.79e-01 | 94.8% | 99.1% |
| 3789279 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 47.0 | 3.61e-01 | 99.4% | 83.4% |
| 3917394 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 41.0 | 3.39e-01 | 82.7% | 45.2% |
| 3638493 | 601.16.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase | 0.52 | 39.0 | 4.10e-01 | 93.1% | 83.1% |
| 4977277 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.52 | 45.0 | 4.52e-01 | 94.8% | 95.6% |
| 3877875 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 42.0 | 3.51e-01 | 86.7% | 47.4% |
| 4541523 | 5001.1.1.119 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PF27607 | 0.52 | 40.0 | 3.37e-01 | 80.9% | 75.2% |
| 3882700 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 42.0 | 3.53e-01 | 86.7% | 49.8% |
| 4982019 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.52 | 42.0 | 2.88e-01 | 85.0% | 99.2% |
| 3862886 | 5001.1.1.111 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw | 0.52 | 40.0 | 3.39e-01 | 82.7% | 47.3% |
| 5039267 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.52 | 40.0 | 3.95e-01 | 94.2% | 74.2% |
| 4126682 | 192.29.1.116 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Apolipoprotein | 0.51 | 43.0 | 4.11e-01 | 94.2% | 78.0% |
| 4958129 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 40.0 | 3.94e-01 | 83.8% | 94.2% |
| None | — | 0.51 | 43.0 | 3.40e-01 | 90.8% | 57.2% | |
| 3766937 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.50 | 40.0 | 3.30e-01 | 85.0% | 44.9% |
D3
medium
residues 230-286
Domain cluster:
rep: MK448722.1__QBX16663.1__Javan269_0022__00022__D214-263
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04860.18 best | Phage_portal | 43.2 | 4.00e-11 | 100.0% | 17.4% |
D4
medium
residues 660-718
Domain cluster:
rep: MH825712.1__AYD87310.1__SEA_VALENTINIPUFF_6__00006__D248-311
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o5vA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 44.0 | 3.27e-01 | 100.0% | 42.0% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.50 | 41.0 | 3.61e-01 | 98.3% | 95.0% |
| 2ftrA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 41.0 | 3.57e-01 | 100.0% | 97.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964369 | 6108.1.1.8 ↗ | alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Phage_Mu_F | 0.80 | 69.0 | 4.41e-01 | 100.0% | 22.0% |
| 4032640 | 601.19.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F | 0.77 | 66.0 | 4.04e-01 | 100.0% | 17.4% |
| 3946757 | 601.19.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F | 0.74 | 63.0 | 4.21e-01 | 100.0% | 24.9% |
| 3596445 | 4342.1.1.0 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like | 0.61 | 53.0 | 3.70e-01 | 100.0% | 35.9% |
| 4019120 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 51.0 | 2.92e-01 | 100.0% | 13.1% |
| 3796334 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.57 | 43.0 | 2.77e-01 | 84.7% | 30.2% |
| 3475182 | 4342.1.1.1 ↗ | alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region | 0.57 | 46.0 | 3.26e-01 | 100.0% | 27.5% |