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NC_031108.1__YP_009290960.1__BI041_gp53__00053
Bact-VirNC_031108.1__YP_009290960.1__BI041_gp53__00053
Identity
- Accession:
- NC_031108 ↗
- Kingdom:
- phage
Quality
58.6
mean pLDDT
Taxonomy
TaxID: 1838138
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 46-114
Domain cluster:
rep: NC_054725.1__YP_010059380.1__KHQ85_gp130__00130__D16-81
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1td6A03 | 1.10.472.40 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 | 0.69 | 36.0 | 3.26e-01 | 97.1% | 38.0% |
| 4c1bA02 | 3.40.50.12700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.68 | 38.0 | 3.34e-01 | 100.0% | 35.9% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.67 | 58.0 | 5.77e-01 | 100.0% | 90.4% |
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 50.0 | 4.30e-01 | 94.2% | 50.9% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 55.0 | 5.01e-01 | 97.1% | 68.5% |
| 1lkxC03 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.66 | 50.0 | 4.28e-01 | 88.4% | 52.3% |
| 3v3kD00 | 1.20.1260.90 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.61 | 54.0 | 4.14e-01 | 100.0% | 42.1% |
| 1uc8A02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.61 | 24.0 | 2.65e-01 | 87.0% | 36.8% |
| 1rh5A00 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.61 | 53.0 | 3.30e-01 | 100.0% | 35.1% |
| 5awwY00 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.61 | 51.0 | 3.22e-01 | 98.6% | 44.8% |
| 4hfvA02 | 6.10.280.170 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Substrate of the Dot/Icm secretion system | 0.60 | 45.0 | 4.49e-01 | 79.7% | 83.1% |
| 3es5A02 | 1.20.272.60 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.58 | 47.0 | 3.97e-01 | 91.3% | 59.0% |
| 2ftrA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 39.0 | 3.50e-01 | 84.1% | 71.8% |
| 3pqkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.69e-01 | 89.9% | 81.8% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3249103 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.77 | 38.0 | 3.16e-01 | 92.8% | 28.7% |
| 4026679 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.71 | 61.0 | 4.18e-01 | 95.7% | 44.1% |
| 3729461 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 43.0 | 3.24e-01 | 87.0% | 26.2% |
| 3575580 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.69 | 53.0 | 4.46e-01 | 84.1% | 65.0% |
| 4950970 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.68 | 60.0 | 3.75e-01 | 98.6% | 23.7% |
| 4016939 | 3755.3.1.30 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ATG14 | 0.67 | 54.0 | 3.58e-01 | 88.4% | 62.5% |
| 3854151 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.66 | 51.0 | 4.90e-01 | 84.1% | 83.7% |
| 3880840 | 375.1.1.246 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook | 0.65 | 58.0 | 5.12e-01 | 100.0% | 95.0% |
| 4475942 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.65 | 56.0 | 4.70e-01 | 95.7% | 90.8% |
| 4239635 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.65 | 57.0 | 4.31e-01 | 98.6% | 97.0% |
| 3280119 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.64 | 55.0 | 4.11e-01 | 97.1% | 66.7% |
| 3356481 | 386.1.1.117 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 | 0.63 | 38.0 | 3.63e-01 | 79.7% | 49.4% |
| 868218 | 1138.1.1.1 ↗ | alpha bundles › Effector protein NleF › Effector protein NleF › Effector protein NleF › NleF_casp_inhib | 0.61 | 54.0 | 4.13e-01 | 100.0% | 41.8% |
| 3789276 | 192.10.1.0 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain | 0.61 | 52.0 | 4.43e-01 | 94.2% | 63.6% |
| 5015087 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.60 | 51.0 | 3.52e-01 | 95.7% | 49.8% |
| 3727157 | 611.7.1.0 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain | 0.59 | 46.0 | 3.92e-01 | 89.9% | 58.4% |
| 3804165 | 376.1.1.113 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Pex2_Pex12 | 0.59 | 52.0 | 5.07e-01 | 95.7% | 88.0% |
| 3176989 | 601.19.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28954 | 0.59 | 51.0 | 3.91e-01 | 97.1% | 56.9% |
| 4516525 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.58 | 49.0 | 3.07e-01 | 95.7% | 46.4% |
| 3642510 | 6026.1.1.29 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › Pex2_Pex12 | 0.58 | 52.0 | 4.81e-01 | 95.7% | 77.6% |
| 4618205 | 604.1.1.150 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 | 0.57 | 48.0 | 3.97e-01 | 91.3% | 57.5% |
| 4645454 | 1008.1.1.109 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › Pex2_Pex12 | 0.56 | 47.0 | 4.40e-01 | 95.7% | 87.8% |