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NC_031111.1__YP_009291243.1__Gompeii16_4__00004
Bact-VirNC_031111.1__YP_009291243.1__Gompeii16_4__00004
Identity
- Accession:
- NC_031111 ↗
- Kingdom:
- phage
Quality
69.7
mean pLDDT
Taxonomy
TaxID: 1873895
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-79
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ymsC00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.58 | 41.0 | 4.19e-01 | 100.0% | 78.7% |
| 7ufsA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.56 | 47.0 | 3.42e-01 | 98.7% | 88.5% |
| 1kafA00 | 3.90.1150.20 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain | 0.53 | 45.0 | 4.10e-01 | 94.9% | 75.0% |
| 1k1yB02 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 43.0 | 3.21e-01 | 98.7% | 92.5% |
| 5xbfA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 37.0 | 3.60e-01 | 89.9% | 67.0% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 42.0 | 4.10e-01 | 88.6% | 88.8% |
| 3ml4A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.52e-01 | 94.9% | 63.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3615429 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.63 | 37.0 | 4.52e-01 | 89.9% | 92.0% |
| 4031984 | 3894.1.1.1 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 | 0.58 | 43.0 | 3.78e-01 | 81.0% | 68.0% |
| 4200177 | 3894.1.1.3 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M | 0.57 | 42.0 | 3.62e-01 | 79.7% | 68.5% |
| 3258230 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.56 | 48.0 | 3.40e-01 | 100.0% | 86.9% |
| 1780243 | 3894.1.1.3 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M | 0.56 | 45.0 | 3.17e-01 | 88.6% | 59.1% |
| 3786070 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.54 | 45.0 | 3.24e-01 | 100.0% | 86.3% |
| 3236833 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.54 | 39.0 | 2.77e-01 | 78.5% | 86.1% |
| 4390281 | 3894.1.1.3 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M | 0.54 | 41.0 | 3.62e-01 | 82.3% | 72.5% |
| 4302938 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.52 | 38.0 | 3.76e-01 | 81.0% | 72.9% |
| 4518121 | 9.7.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh | 0.51 | 42.0 | 3.86e-01 | 87.3% | 78.0% |
| 3224013 | 376.1.6.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain | 0.51 | 26.0 | 3.52e-01 | 93.7% | 100.0% |
| 4124063 | 9.7.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh | 0.51 | 42.0 | 4.04e-01 | 88.6% | 87.8% |