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NC_031120.1__YP_009292094.1__BIZ78_gp259__00014
Bact-VirNC_031120.1__YP_009292094.1__BIZ78_gp259__00014
Identity
- Accession:
- NC_031120 ↗
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Machinavirus›
Erwinia_phage_vB_EamM_Caitlin
TaxID: 1883379
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-126
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.70 | 45.0 | 5.33e-01 | 70.4% | 96.4% |
| 6lbsB01 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.69 | 34.0 | 4.20e-01 | 97.6% | 74.7% |
| 4pg4B03 | 3.30.70.3100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 30.0 | 3.84e-01 | 100.0% | 70.7% |
| 3p04A00 | 3.30.110.150 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein | 0.59 | 25.0 | 3.12e-01 | 97.6% | 61.0% |
| 2qytA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.59 | 35.0 | 3.88e-01 | 73.6% | 73.3% |
| 2jv2A00 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.58 | 33.0 | 3.98e-01 | 90.4% | 89.5% |
| 1h99A02 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.57 | 38.0 | 4.10e-01 | 72.8% | 79.2% |
| 3p9dG01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.56 | 42.0 | 3.40e-01 | 80.0% | 93.3% |
| 1x3kA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 40.0 | 3.78e-01 | 73.6% | 71.4% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.55 | 41.0 | 3.76e-01 | 79.2% | 69.9% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 41.0 | 3.95e-01 | 80.0% | 71.4% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 30.0 | 3.53e-01 | 83.2% | 81.0% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 39.0 | 3.77e-01 | 79.2% | 69.8% |
| 4akgA04 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.52 | 37.0 | 3.43e-01 | 72.0% | 67.9% |
| 2oebA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.51 | 41.0 | 3.89e-01 | 88.0% | 94.1% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.51 | 39.0 | 3.87e-01 | 83.2% | 77.0% |
| 2gb7D00 | 3.40.91.80 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.50 | 39.0 | 3.07e-01 | 84.0% | 96.9% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3590527 | 4953.1.1.6 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › DUF2512 | 0.68 | 56.0 | 5.95e-01 | 100.0% | 100.0% |
| 3877844 | 529.1.1.2 ↗ | few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP | 0.66 | 46.0 | 5.31e-01 | 96.0% | 100.0% |
| 3789554 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.66 | 42.0 | 4.89e-01 | 71.2% | 88.9% |
| 5057841 | 1079.1.1.1 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD | 0.64 | 47.0 | 3.76e-01 | 76.0% | 83.3% |
| 4959135 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.62 | 45.0 | 3.73e-01 | 75.2% | 90.9% |
| 1935871 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.60 | 43.0 | 3.74e-01 | 73.6% | 73.7% |
| 3417771 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.60 | 41.0 | 3.44e-01 | 70.4% | 74.2% |
| 3756738 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.59 | 42.0 | 3.54e-01 | 73.6% | 90.7% |
| 4969306 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 43.0 | 3.42e-01 | 76.0% | 53.2% |
| 4030833 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.58 | 52.0 | 4.26e-01 | 96.8% | 91.1% |
| 4943605 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.58 | 51.0 | 4.07e-01 | 96.0% | 80.3% |
| 4567779 | 5050.1.1.14 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › ATG22 | 0.57 | 41.0 | 3.37e-01 | 75.2% | 85.0% |
| 3238741 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.55 | 39.0 | 3.36e-01 | 74.4% | 90.2% |
| 3691329 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.54 | 38.0 | 3.18e-01 | 73.6% | 82.4% |
| 3503474 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.53 | 45.0 | 3.71e-01 | 94.4% | 76.9% |
| 3386701 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.53 | 38.0 | 3.14e-01 | 74.4% | 43.4% |
| 5065913 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.52 | 36.0 | 3.10e-01 | 71.2% | 81.9% |
| 3989931 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.51 | 43.0 | 3.77e-01 | 92.8% | 79.0% |
| 3345767 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.51 | 40.0 | 4.04e-01 | 84.0% | 96.0% |
| 3505115 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.51 | 36.0 | 3.61e-01 | 79.2% | 71.5% |