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NC_031122.1__YP_009292452.1__BIZ73_gp61__00061

Bact-Vir

NC_031122.1__YP_009292452.1__BIZ73_gp61__00061

Identity

Accession:
NC_031122 ↗
Kingdom:
phage

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eyrevirus› Gordonia_phage_Eyre

TaxID: 1887646

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-50_69-168
PDB
Domain cluster: rep: MH651167.1__AXQ62904.1__SEA_ANGELIQUE_73__00073__D11-40_57-158
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ay5A02 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.69 42.0 4.05e-01 93.2% 53.3%
4rm7A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.65 42.0 4.36e-01 93.9% 68.3%
3p4tA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.65 45.0 4.56e-01 100.0% 70.0%
3wscA00 1.20.1420.20 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif 0.65 43.0 3.56e-01 97.3% 39.0%
1rx0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.63 45.0 4.46e-01 100.0% 69.0%
3bxjA02 1.10.506.20 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › 0.62 33.0 3.87e-01 98.6% 74.5%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 34.0 3.87e-01 84.5% 72.6%
1rxqD00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.60 55.0 5.30e-01 98.0% 92.3%
1fftC00 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.60 44.0 4.09e-01 98.0% 60.5%
3owaA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 47.0 4.47e-01 100.0% 71.9%
1xzpA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.59 38.0 3.72e-01 99.3% 57.8%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 31.0 3.57e-01 84.5% 69.4%
3geeA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.57 39.0 3.75e-01 98.0% 60.1%
1oaoC01 1.10.8.190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Carbon monoxide dehydrogenase alpha subunit. Chain M, domain 1 0.57 40.0 4.41e-01 100.0% 89.2%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 38.0 4.40e-01 100.0% 97.1%
1dowA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 43.0 3.83e-01 80.4% 94.1%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.55 29.0 3.20e-01 80.4% 60.5%
4doyA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 43.0 4.04e-01 100.0% 67.8%
6adqG01 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.54 41.0 3.89e-01 98.0% 65.7%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.54 45.0 4.47e-01 88.5% 94.8%
6o7uc01 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.53 41.0 3.77e-01 95.3% 62.1%
7xrxB01 1.20.1420.20 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif 0.53 45.0 3.43e-01 96.6% 76.9%
2oexA02 1.20.140.50 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › alix/aip1 like domains 0.52 48.0 4.34e-01 100.0% 84.8%
1kqfC00 1.20.950.20 Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C 0.51 36.0 3.16e-01 70.3% 91.2%
1tjoB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 43.0 4.04e-01 87.8% 78.3%
1ek9A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.51 45.0 3.31e-01 98.0% 98.6%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.51 37.0 2.89e-01 74.3% 86.5%
1fntc01 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.51 43.0 4.04e-01 98.6% 72.9%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3603231 604.18.1.0 ↗ alpha bundles › Spectrin repeat-like › Triple-helical domain in regulatory ATPase variant A (RavA) › Triple-helical domain in regulatory ATPase variant A (RavA) 0.65 33.0 4.10e-01 81.1% 77.8%
3964598 192.29.1.104 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4149 0.59 41.0 4.22e-01 97.3% 73.1%
3648060 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.58 39.0 4.10e-01 87.8% 74.8%
4283760 1203.1.2.7 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › GNVR 0.57 32.0 3.31e-01 70.3% 55.7%
5021548 3562.1.1.0 ↗ alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 0.56 46.0 4.71e-01 93.9% 90.0%
3574876 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.56 34.0 3.61e-01 89.9% 65.2%
4994798 3646.1.1.0 ↗ alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters 0.52 43.0 3.95e-01 91.2% 100.0%
4926847 3962.1.1.0 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.51 38.0 3.78e-01 77.7% 85.6%
3226292 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.50 36.0 2.95e-01 72.3% 87.7%
D2 medium residues 175-307
PDB
Domain cluster: rep: MN234178.1__QFG09626.1__PBI_TRIPLEJ_82__00082__D147-273
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3308663 601.3.1.11 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PHD_Oberon 0.51 42.0 4.10e-01 98.5% 80.7%
3922387 260.1.1.1 ↗ a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin 0.50 36.0 2.41e-01 97.7% 18.0%