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NC_031125.1__YP_009292659.1__BIZ66_gp19__00019

Bact-Vir

NC_031125.1__YP_009292659.1__BIZ66_gp19__00019

Identity

Accession:
NC_031125 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-101
PDB
D2 high residues 102-191
PDB
D3 high residues 922-1038
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jzyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.63 48.0 4.74e-01 80.3% 98.4%
6kxkB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 43.0 4.14e-01 80.3% 97.8%
1kv3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 37.0 3.87e-01 89.7% 71.2%
1qg3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 4.15e-01 98.3% 80.8%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 30.0 3.74e-01 75.2% 85.9%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.52 35.0 3.82e-01 87.2% 86.2%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.83e-01 75.2% 94.5%
4k59A00 2.60.40.4380 Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA 0.51 29.0 3.58e-01 88.0% 97.0%
3mqqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.85e-01 79.5% 90.7%
1ztuA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 36.0 3.33e-01 77.8% 57.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588265 3386.1.1.0 beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related 0.94 69.0 8.01e-01 95.7% 98.9%
4945086 239.5.1.0 beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain 0.62 37.0 4.62e-01 88.9% 100.0%
3926576 1.1.9.33 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_NSUN2 0.62 38.0 4.44e-01 86.3% 88.7%
3227424 331.18.1.8 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › BBS7_pf 0.57 40.0 4.16e-01 87.2% 79.0%
3993449 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.57 40.0 4.11e-01 98.3% 76.4%
3189622 331.17.1.1 a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.57 45.0 3.79e-01 86.3% 58.7%
4946101 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 37.0 3.90e-01 92.3% 78.1%
5065641 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.54e-01 76.9% 56.7%
3280174 223.5.1.0 a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.54 36.0 4.07e-01 78.6% 92.9%
3439923 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.54 32.0 3.84e-01 87.2% 92.0%
3373308 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.52 27.0 3.43e-01 70.1% 87.7%
5056920 2004.1.1.58 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.52 37.0 2.82e-01 75.2% 68.9%
4866061 223.1.1.12 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.52 38.0 4.03e-01 78.6% 88.2%
5043349 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 34.0 3.23e-01 79.5% 55.2%
5002092 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.51 35.0 3.83e-01 70.1% 93.3%
4542815 223.1.1.12 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.51 37.0 3.55e-01 78.6% 64.3%
3976724 11.1.1.42 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C 0.51 35.0 3.95e-01 72.6% 100.0%
D4 medium residues 201-215_321-389
PDB
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.75 60.0 5.78e-01 85.7% 91.6%
2gksB01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.67 55.0 4.60e-01 88.1% 91.5%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 55.0 4.29e-01 89.3% 67.0%
1q7hA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.62 50.0 4.98e-01 88.1% 86.0%
3zv0C01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.61 49.0 4.06e-01 88.1% 48.7%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.61 34.0 2.12e-01 88.1% 8.5%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.54 46.0 3.48e-01 92.9% 77.0%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 44.0 2.90e-01 95.2% 46.6%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 41.0 3.71e-01 84.5% 95.7%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 40.0 3.68e-01 98.8% 60.5%
1lmiA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.85e-01 96.4% 92.4%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 42.0 2.96e-01 100.0% 47.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033714 1.1.13.7 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail 0.89 78.0 7.43e-01 91.7% 92.6%
3590379 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.82 64.0 6.27e-01 82.1% 90.0%
4031753 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.81 64.0 6.18e-01 84.5% 78.9%
4647050 1.1.13.56 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.78 62.0 6.33e-01 84.5% 90.0%
3945543 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 59.0 5.95e-01 86.9% 90.6%
5079927 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 55.0 5.42e-01 89.3% 78.9%
4323001 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.69 54.0 5.13e-01 84.5% 95.0%
4232299 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.67 52.0 5.00e-01 83.3% 96.8%
3219406 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 39.0 4.96e-01 84.5% 98.0%
4597893 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.67 52.0 4.99e-01 84.5% 94.0%
5001719 1.1.9.50 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.66 58.0 5.27e-01 98.8% 93.0%
3979957 1.1.9.50 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530 0.66 58.0 4.82e-01 98.8% 98.7%
4992195 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 45.0 5.09e-01 88.1% 100.0%
5002756 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.64 46.0 4.82e-01 75.0% 94.7%
4932663 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.63 48.0 4.42e-01 82.1% 88.2%
3940730 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.11e-01 70.2% 72.6%
4020093 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 42.0 3.56e-01 70.2% 66.7%
4943587 1.1.9.54 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PAPS_reduct 0.58 50.0 5.01e-01 100.0% 95.3%
4966529 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 50.0 4.80e-01 92.9% 93.7%
5011041 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.57 49.0 4.95e-01 97.6% 95.3%
3196339 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 50.0 4.35e-01 100.0% 95.4%
1884230 3775.1.1.1 beta barrels › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › Lysosome membrane protein 2 lumenal domain › CD36 0.54 39.0 2.56e-01 89.3% 16.2%
3676128 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.53 37.0 3.44e-01 73.8% 57.4%
4193641 11.4.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF1942 0.52 43.0 3.78e-01 96.4% 90.3%
D5 medium residues 221-317
PDB
D6 medium residues 390-466
PDB
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3te6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 38.0 3.45e-01 71.4% 84.8%
1qu6A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 32.0 3.23e-01 70.1% 55.3%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 41.0 2.91e-01 79.2% 57.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4248043 6094.1.1.3 a+b two layers › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › CurL-like_PKS_C 0.61 44.0 4.09e-01 77.9% 90.0%
4954624 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 41.0 3.63e-01 74.0% 62.3%
4349479 6094.1.1.3 a+b two layers › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › CurL-like_PKS_C 0.58 41.0 3.84e-01 74.0% 88.4%
4521056 6094.1.1.0 a+b two layers › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase 0.58 44.0 3.89e-01 80.5% 80.9%
4012932 6094.1.1.0 a+b two layers › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase 0.57 41.0 3.69e-01 75.3% 81.9%
4640681 6094.1.1.0 a+b two layers › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase 0.56 41.0 3.68e-01 77.9% 77.3%
4578092 2484.4.1.1 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.55 40.0 3.42e-01 85.7% 45.9%
4605997 6094.1.1.0 a+b two layers › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase 0.52 42.0 3.72e-01 87.0% 80.0%
4011237 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.08e-01 90.9% 44.4%
5048757 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.15e-01 76.6% 52.6%
3697981 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.51 42.0 3.13e-01 98.7% 34.6%
3726964 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.51 41.0 2.95e-01 88.3% 51.8%
D7 medium residues 539-666
PDB
D8 medium residues 684-751
PDB
D9 medium residues 752-813
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s9xA00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.81 57.0 4.09e-01 72.6% 82.4%
1t62B00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.70 52.0 3.81e-01 79.0% 80.4%
3vseA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.68 49.0 4.78e-01 75.8% 100.0%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.64 45.0 4.45e-01 74.2% 100.0%
5h8yD02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.64 48.0 3.38e-01 82.3% 70.0%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 44.0 3.91e-01 77.4% 75.8%
2as0A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.60 42.0 4.12e-01 75.8% 100.0%
3c0kA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.59 42.0 4.08e-01 77.4% 100.0%
1iq8A04 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.58 39.0 3.68e-01 71.0% 96.2%
1q7hA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.57 44.0 4.03e-01 88.7% 96.5%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.56 47.0 3.06e-01 100.0% 59.6%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 40.0 3.18e-01 75.8% 97.0%
3zgzD04 2.20.28.290 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 32.0 3.29e-01 82.3% 53.2%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.55 37.0 3.60e-01 74.2% 62.0%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.54 44.0 3.85e-01 90.3% 98.9%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.54 37.0 3.58e-01 74.2% 62.0%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.54 31.0 3.17e-01 88.7% 52.4%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.59e-01 75.8% 78.1%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.14e-01 72.6% 75.0%
5zveA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.51 41.0 3.80e-01 93.5% 90.7%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
144031 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.81 57.0 4.09e-01 72.6% 82.4%
5061935 7575.1.1.4 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 0.68 52.0 3.24e-01 83.9% 36.1%
3885141 391.1.2.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.68 43.0 4.80e-01 74.2% 88.9%
3871990 391.1.2.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.64 41.0 4.26e-01 77.4% 72.7%
4620744 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.64 43.0 4.39e-01 71.0% 95.0%
4927245 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.63 43.0 3.85e-01 72.6% 80.0%
4977675 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 43.0 3.83e-01 72.6% 80.0%
4591781 2004.1.1.1117 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF2478 0.63 48.0 3.49e-01 82.3% 41.8%
3667063 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 43.0 2.81e-01 72.6% 21.2%
4370928 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.63 42.0 4.25e-01 71.0% 96.9%
4498362 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.62 43.0 3.80e-01 72.6% 78.9%
3666657 1.1.9.17 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.62 45.0 3.96e-01 77.4% 86.3%
3436132 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 42.0 2.70e-01 72.6% 18.8%
4949393 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.61 42.0 3.76e-01 71.0% 84.4%
187 1.1.9.17 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.61 43.0 4.18e-01 77.4% 98.6%
4945851 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.60 41.0 3.72e-01 72.6% 83.3%
4956000 1.1.9.17 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.59 41.0 4.02e-01 74.2% 100.0%
4943587 1.1.9.54 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PAPS_reduct 0.59 44.0 4.03e-01 82.3% 97.6%
5067762 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.58 45.0 3.34e-01 83.9% 32.5%
5054628 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.58 40.0 3.69e-01 72.6% 89.4%
3957910 316.1.1.26 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › SMODS 0.58 50.0 4.06e-01 98.4% 100.0%
3652288 145.1.1.50 alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_1 0.57 46.0 3.03e-01 93.5% 47.0%
3656902 208.1.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.56 41.0 3.53e-01 80.6% 81.5%
5048350 1.1.9.6 beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.54 43.0 3.97e-01 91.9% 97.6%
5042356 1.1.9.6 beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.52 43.0 4.17e-01 93.5% 100.0%
4958559 1.1.9.6 beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.51 41.0 3.84e-01 90.3% 97.5%
4928178 1.1.9.6 beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.51 41.0 3.11e-01 93.5% 88.8%
4647050 1.1.13.56 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.51 36.0 3.38e-01 75.8% 96.2%
5010554 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.50 37.0 3.65e-01 79.0% 78.5%
3307861 5.1.8.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › WD40 0.50 39.0 3.15e-01 88.7% 89.6%
D10 medium residues 816-917
PDB
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vckA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.69 54.0 4.32e-01 84.3% 59.6%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.66 47.0 3.86e-01 73.5% 48.4%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 47.0 4.26e-01 76.5% 62.3%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.64 59.0 4.43e-01 100.0% 61.5%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.63 49.0 4.37e-01 81.4% 89.4%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 44.0 3.77e-01 73.5% 64.2%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.61 41.0 4.11e-01 71.6% 66.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 44.0 4.08e-01 76.5% 63.0%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 46.0 4.05e-01 80.4% 75.7%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 44.0 4.09e-01 76.5% 65.6%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 43.0 3.98e-01 75.5% 63.2%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 49.0 3.74e-01 94.1% 93.6%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.58 36.0 3.87e-01 73.5% 72.7%
2cwsA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 3.37e-01 83.3% 74.4%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 3.64e-01 83.3% 66.9%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.47e-01 80.4% 66.7%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.55 39.0 3.46e-01 74.5% 79.3%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 47.0 3.36e-01 94.1% 88.4%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.54 48.0 4.11e-01 95.1% 64.8%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.54 45.0 3.74e-01 90.2% 54.8%
2v73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.51e-01 84.3% 65.0%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 38.0 3.33e-01 74.5% 56.7%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.54 45.0 3.75e-01 92.2% 56.0%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.31e-01 86.3% 97.4%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.53e-01 86.3% 62.6%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 40.0 3.22e-01 83.3% 74.2%
2zzjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.21e-01 87.3% 56.7%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.51 45.0 3.39e-01 100.0% 51.7%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.50 36.0 3.44e-01 75.5% 66.9%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.50 43.0 3.13e-01 100.0% 40.1%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978651 241.13.1.1 a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › Sif 0.73 42.0 4.25e-01 84.3% 56.2%
4419937 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.73 57.0 6.16e-01 93.1% 97.6%
3643596 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.72 61.0 5.47e-01 100.0% 66.4%
4515973 5084.5.1.32 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › LOC400499 0.67 62.0 3.86e-01 100.0% 24.0%
5046358 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 54.0 4.74e-01 87.3% 67.3%
4114694 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.66 43.0 3.82e-01 74.5% 47.9%
1498413 3894.1.1.0 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain 0.65 56.0 5.16e-01 99.0% 73.4%
3990496 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 41.0 4.72e-01 76.5% 92.9%
5001279 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.63 59.0 3.96e-01 100.0% 36.6%
3268625 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.63 55.0 4.21e-01 100.0% 42.3%
3785596 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.63 43.0 3.66e-01 70.6% 66.1%
3177342 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.62 43.0 3.89e-01 70.6% 78.5%
3685360 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.62 42.0 3.91e-01 70.6% 59.2%
3595269 77.2.1.0 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.60 52.0 3.90e-01 100.0% 40.0%
3173251 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.59 48.0 4.13e-01 90.2% 92.9%
4570827 12.3.1.68 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PF25841 0.58 42.0 3.19e-01 75.5% 55.6%
3886715 12.3.1.43 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › NCU-G1 0.57 48.0 3.43e-01 95.1% 98.2%
4109711 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.57 46.0 3.43e-01 89.2% 93.3%
4135453 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.56 41.0 4.19e-01 75.5% 84.0%
3263006 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.56 45.0 3.93e-01 99.0% 55.6%
3967227 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.56 49.0 4.06e-01 96.1% 96.1%
3680499 5.1.4.369 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.56 48.0 2.88e-01 100.0% 29.4%
3204975 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.56 39.0 3.35e-01 71.6% 77.6%
3789935 3369.1.1.0 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.56 48.0 3.89e-01 94.1% 74.7%
3865082 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.55 39.0 4.16e-01 72.5% 86.7%
1144020 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 41.0 3.47e-01 80.4% 66.7%
3233389 5.1.4.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.54 44.0 3.05e-01 91.2% 39.3%
3367547 844.1.1.4 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.54 47.0 3.89e-01 99.0% 55.7%
2389389 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.54 45.0 3.52e-01 91.2% 78.1%
3493765 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 3.13e-01 100.0% 46.0%
4012990 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.52 38.0 3.22e-01 78.4% 77.1%
4563304 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.51 44.0 3.20e-01 100.0% 51.5%
3854886 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.51 38.0 3.91e-01 92.2% 85.3%
3853571 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.51 38.0 3.92e-01 95.1% 86.3%
3283053 383.2.1.0 few secondary structure elements › Defensin-like 0.50 37.0 3.73e-01 80.4% 98.1%
3859372 9.13.1.0 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.50 39.0 3.92e-01 91.2% 83.8%