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NC_031126.1__YP_009292836.1__BIZ83_gp144__00136
Bact-VirNC_031126.1__YP_009292836.1__BIZ83_gp144__00136
Identity
- Accession:
- NC_031126 ↗
- Kingdom:
- phage
Quality
76.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Machinavirus›
Erwinia_phage_vB_EamM_ChrisDB
TaxID: 1883371
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 53-125
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.84 | 59.0 | 4.62e-01 | 74.0% | 36.7% |
| 4wpeA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.79 | 55.0 | 3.61e-01 | 74.0% | 18.9% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.78 | 52.0 | 4.72e-01 | 79.5% | 53.2% |
| 1iipA02 | 1.10.150.160 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.77 | 54.0 | 5.15e-01 | 72.6% | 71.8% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.77 | 51.0 | 4.82e-01 | 72.6% | 57.5% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 47.0 | 5.16e-01 | 74.0% | 79.3% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.74 | 56.0 | 4.47e-01 | 79.5% | 78.3% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.74 | 57.0 | 5.40e-01 | 82.2% | 84.7% |
| 2yxhA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.72 | 52.0 | 4.51e-01 | 84.9% | 49.6% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 50.0 | 5.00e-01 | 74.0% | 70.1% |
| 8itfR01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.71 | 52.0 | 3.45e-01 | 83.6% | 20.0% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 49.0 | 5.20e-01 | 74.0% | 81.5% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.70 | 49.0 | 4.59e-01 | 72.6% | 63.3% |
| 4jfcA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.70 | 48.0 | 5.38e-01 | 86.3% | 92.9% |
| 4jylA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.70 | 45.0 | 5.37e-01 | 75.3% | 100.0% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.68 | 44.0 | 4.38e-01 | 78.1% | 64.0% |
| 4fzwA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.67 | 46.0 | 5.01e-01 | 90.4% | 89.7% |
| 3qxzA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.66 | 47.0 | 5.15e-01 | 90.4% | 90.0% |
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 58.0 | 3.82e-01 | 100.0% | 77.7% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.66 | 51.0 | 4.05e-01 | 84.9% | 67.3% |
| 2xzmO02 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.65 | 47.0 | 4.79e-01 | 78.1% | 78.6% |
| 2hw5A02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.65 | 45.0 | 4.98e-01 | 90.4% | 94.7% |
| 3bujA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.64 | 49.0 | 3.05e-01 | 82.2% | 18.4% |
| 2x0qA04 | 1.10.510.40 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › | 0.64 | 47.0 | 3.56e-01 | 80.8% | 53.4% |
| 6f1eA01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.64 | 47.0 | 3.76e-01 | 80.8% | 41.0% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 47.0 | 4.25e-01 | 93.2% | 56.2% |
| 1j30A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 54.0 | 4.42e-01 | 100.0% | 57.4% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.62 | 50.0 | 4.49e-01 | 91.8% | 62.7% |
| 2lf0A01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.61 | 44.0 | 4.82e-01 | 76.7% | 93.3% |
| 1dciA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.58 | 41.0 | 4.37e-01 | 90.4% | 88.9% |
| 6g94A00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.58 | 50.0 | 3.83e-01 | 97.3% | 49.4% |
| 3nrxA00 | 1.20.58.1520 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 47.0 | 3.98e-01 | 95.9% | 54.5% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.56 | 44.0 | 3.90e-01 | 84.9% | 60.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3824583 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.95 | 67.0 | 4.72e-01 | 72.6% | 27.9% |
| 4519046 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.89 | 70.0 | 5.52e-01 | 82.2% | 45.9% |
| 4984355 | 3843.1.1.1 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 | 0.85 | 60.0 | 5.36e-01 | 74.0% | 54.5% |
| 3506234 | 5043.1.1.15 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Med14 | 0.84 | 59.0 | 5.15e-01 | 72.6% | 50.5% |
| 4453744 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.82 | 60.0 | 5.16e-01 | 76.7% | 54.5% |
| 3680918 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.82 | 57.0 | 6.01e-01 | 89.0% | 81.5% |
| 3507095 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.80 | 56.0 | 5.00e-01 | 72.6% | 56.0% |
| 3257705 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.79 | 55.0 | 5.04e-01 | 72.6% | 55.8% |
| 5008545 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.78 | 56.0 | 5.87e-01 | 74.0% | 83.1% |
| 3927560 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.77 | 53.0 | 5.76e-01 | 71.2% | 91.7% |
| 3929449 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.72 | 52.0 | 3.70e-01 | 75.3% | 35.7% |
| 3215082 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.72 | 51.0 | 4.08e-01 | 74.0% | 40.0% |
| 4993195 | 632.6.1.15 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › PF26119 | 0.71 | 49.0 | 4.51e-01 | 80.8% | 55.8% |
| 3539169 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.70 | 64.0 | 4.65e-01 | 98.6% | 71.9% |
| 3410541 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.70 | 63.0 | 4.00e-01 | 97.3% | 72.1% |
| 2814929 | 150.1.1.14 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like | 0.68 | 48.0 | 4.99e-01 | 90.4% | 80.9% |
| 3609215 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.65 | 42.0 | 4.12e-01 | 71.2% | 60.0% |
| 5030197 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.65 | 47.0 | 3.51e-01 | 75.3% | 33.3% |
| 150489 | 601.1.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › CHASE3 | 0.65 | 49.0 | 4.08e-01 | 80.8% | 46.5% |
| 3878643 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.64 | 51.0 | 4.87e-01 | 86.3% | 88.2% |
| 3180581 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.62 | 52.0 | 5.01e-01 | 93.2% | 88.2% |
| 3667622 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.62 | 49.0 | 4.56e-01 | 84.9% | 83.3% |
| 3527434 | 6006.1.1.6 ↗ | extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF27661 | 0.61 | 53.0 | 4.13e-01 | 97.3% | 54.8% |
| 3916403 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.60 | 52.0 | 5.00e-01 | 97.3% | 94.1% |
| 3486385 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.59 | 51.0 | 4.54e-01 | 95.9% | 74.3% |
| 5031560 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.55 | 40.0 | 2.69e-01 | 80.8% | 53.6% |
| 3614667 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 48.0 | 3.08e-01 | 100.0% | 62.6% |
| 3652772 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 42.0 | 2.75e-01 | 97.3% | 90.3% |