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NC_031126.1__YP_009292890.1__BIZ83_gp090__00190

Bact-Vir

NC_031126.1__YP_009292890.1__BIZ83_gp090__00190

Identity

Accession:
NC_031126 ↗
Kingdom:
phage

Quality

69.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Machinavirus› Erwinia_phage_vB_EamM_ChrisDB

TaxID: 1883371

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-51
PDB
D2 medium residues 52-150
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 34.0 4.03e-01 73.7% 71.2%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.63 47.0 4.56e-01 78.8% 78.6%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 44.0 3.99e-01 73.7% 100.0%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.61 47.0 4.16e-01 80.8% 76.2%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.61 46.0 4.57e-01 80.8% 82.7%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.60 46.0 4.46e-01 81.8% 75.9%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 43.0 3.83e-01 74.7% 100.0%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.59 44.0 3.85e-01 79.8% 84.5%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 44.0 3.90e-01 77.8% 99.3%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.56 41.0 4.11e-01 79.8% 74.5%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.56 41.0 3.61e-01 75.8% 86.0%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 43.0 4.08e-01 84.8% 94.1%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 42.0 3.61e-01 83.8% 73.8%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 40.0 3.74e-01 82.8% 81.1%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.32e-01 83.8% 67.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 30.0 3.57e-01 76.8% 87.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998507 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 37.0 4.69e-01 77.8% 98.1%
3821429 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.64 45.0 3.85e-01 73.7% 63.7%
4336488 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 37.0 4.33e-01 78.8% 82.9%
3204975 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.63 48.0 4.06e-01 80.8% 73.9%
4083857 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.62 45.0 3.98e-01 74.7% 98.6%
4012990 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.62 47.0 3.89e-01 80.8% 70.4%
3404871 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.62 45.0 4.40e-01 76.8% 93.6%
3394516 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.61 47.0 4.11e-01 80.8% 75.7%
3415592 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.61 46.0 4.04e-01 80.8% 77.3%
3388787 719.1.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 0.60 45.0 4.17e-01 79.8% 92.0%
3743289 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.60 45.0 4.44e-01 78.8% 87.6%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 36.0 4.30e-01 72.7% 92.3%
4359254 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 38.0 4.21e-01 78.8% 84.0%
3550970 719.1.1.5 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.59 44.0 4.27e-01 77.8% 91.8%
4544568 719.1.1.5 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.59 44.0 4.25e-01 77.8% 90.9%
3737835 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.59 46.0 4.59e-01 81.8% 92.0%
4937869 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.58 42.0 4.49e-01 73.7% 85.9%
3796107 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.58 34.0 3.61e-01 75.8% 64.4%
3261967 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 40.0 3.08e-01 71.7% 90.7%
3461718 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 42.0 3.21e-01 77.8% 54.3%
3315619 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 41.0 2.89e-01 76.8% 30.8%
3767960 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.56 40.0 3.69e-01 73.7% 89.6%
3688914 283.1.1.4 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.56 45.0 4.01e-01 86.9% 63.6%
4081797 3860.1.1.158 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.56 45.0 3.95e-01 86.9% 60.0%
3882464 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 35.0 3.87e-01 73.7% 82.7%
4027822 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 38.0 3.02e-01 76.8% 71.4%
3336515 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 40.0 2.84e-01 84.8% 93.0%
5017958 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 42.0 3.72e-01 90.9% 72.0%