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NC_031129.1__YP_009293540.1__BI168_gp083__00083

Bact-Vir

NC_031129.1__YP_009293540.1__BI168_gp083__00083

Identity

Accession:
NC_031129 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-86
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.72 50.0 5.14e-01 73.1% 77.8%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.68 53.0 5.07e-01 85.1% 74.7%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.67 54.0 4.47e-01 88.1% 83.1%
2jobA00 3.30.160.320 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 51.0 4.50e-01 85.1% 63.7%
4n03A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 46.0 3.37e-01 73.1% 29.0%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 46.0 3.80e-01 80.6% 41.3%
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.65 47.0 4.57e-01 79.1% 100.0%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 50.0 4.26e-01 86.6% 56.1%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 49.0 4.92e-01 88.1% 83.6%
6izcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.64 54.0 3.71e-01 100.0% 38.4%
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.63 51.0 3.46e-01 91.0% 64.1%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.62 52.0 4.19e-01 100.0% 46.4%
3ll3B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 47.0 3.22e-01 83.6% 58.0%
7v6bA01 3.30.160.380 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain 0.61 50.0 4.27e-01 92.5% 64.0%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.61 50.0 3.93e-01 91.0% 73.8%
1x31A02 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.61 49.0 3.14e-01 94.0% 49.9%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.60 52.0 3.82e-01 100.0% 47.9%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.60 46.0 3.84e-01 83.6% 74.4%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.60 45.0 3.20e-01 85.1% 24.4%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 42.0 3.76e-01 82.1% 52.6%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 43.0 3.85e-01 77.6% 79.2%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 39.0 3.39e-01 88.1% 42.6%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.59 41.0 4.05e-01 77.6% 69.0%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 3.67e-01 76.1% 55.9%
1sjgA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 43.0 3.66e-01 83.6% 47.3%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 49.0 4.19e-01 100.0% 78.8%
2b5eA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 45.0 3.80e-01 89.6% 82.4%
2hdlA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 38.0 3.71e-01 71.6% 64.9%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 4.09e-01 82.1% 93.2%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 37.0 3.92e-01 73.1% 81.0%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.85e-01 82.1% 65.1%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 42.0 2.70e-01 82.1% 28.4%
8djfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 44.0 2.99e-01 92.5% 49.3%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 32.0 3.41e-01 74.6% 66.7%
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.80e-01 86.6% 85.4%
1xa3A01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.54 46.0 3.04e-01 97.0% 36.7%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.22e-01 80.6% 40.4%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.54 43.0 2.76e-01 91.0% 37.9%
4eq3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.60e-01 82.1% 79.6%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.53 43.0 3.13e-01 88.1% 75.4%
1stzA03 3.30.390.60 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Heat-inducible transcription repressor hrca homolog; domain 3 0.53 40.0 3.66e-01 82.1% 61.8%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 3.48e-01 73.1% 82.9%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 36.0 2.88e-01 73.1% 60.8%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.52 37.0 3.03e-01 77.6% 46.0%
4boqA00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 45.0 3.38e-01 100.0% 87.4%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.51 37.0 3.00e-01 80.6% 93.8%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 39.0 2.71e-01 91.0% 50.5%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 32.0 3.34e-01 71.6% 68.9%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.50 35.0 3.61e-01 86.6% 77.3%
2cuhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.33e-01 77.6% 84.1%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3335785 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.70 49.0 4.99e-01 73.1% 75.4%
3607863 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 50.0 4.54e-01 82.1% 61.1%
3893915 330.1.1.3 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.67 52.0 4.31e-01 86.6% 47.2%
3281018 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.66 52.0 4.58e-01 86.6% 98.0%
5038844 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.65 51.0 4.83e-01 86.6% 76.2%
3371527 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 51.0 4.21e-01 86.6% 61.3%
3466381 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 51.0 4.34e-01 86.6% 66.4%
3941423 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.64 50.0 4.66e-01 85.1% 67.1%
3469923 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 46.0 4.12e-01 82.1% 54.7%
3887124 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 46.0 3.44e-01 82.1% 29.7%
3497129 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 52.0 4.55e-01 94.0% 61.0%
3909529 2485.1.1.55 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 0.63 50.0 3.69e-01 91.0% 57.4%
3480330 330.1.1.3 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.63 51.0 4.22e-01 94.0% 68.5%
3168516 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.62 54.0 4.24e-01 100.0% 76.0%
3176337 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 49.0 3.06e-01 86.6% 31.7%
4423214 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 47.0 4.20e-01 91.0% 56.2%
4941253 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 45.0 4.07e-01 82.1% 58.0%
4054903 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 43.0 2.42e-01 73.1% 17.3%
4614219 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.61 46.0 3.26e-01 83.6% 24.8%
3372861 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.61 47.0 4.00e-01 88.1% 55.0%
3584039 5.1.5.89 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.60 46.0 2.86e-01 82.1% 25.6%
5051010 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 54.0 4.56e-01 100.0% 78.2%
3480636 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 43.0 2.62e-01 76.1% 34.1%
3306198 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 44.0 2.82e-01 79.1% 32.2%
3173930 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 42.0 2.54e-01 74.6% 25.6%
3782338 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 46.0 4.22e-01 86.6% 63.4%
4119875 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 41.0 4.18e-01 74.6% 73.8%
3624046 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 3.41e-01 71.6% 41.7%
3576812 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.59 43.0 3.88e-01 79.1% 74.7%
3247407 220.1.1.50 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.59 40.0 3.34e-01 73.1% 38.4%
5079725 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 43.0 4.45e-01 88.1% 90.0%
3606311 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 3.96e-01 76.1% 65.3%
3526272 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.58 41.0 3.09e-01 79.1% 32.7%
4376478 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 45.0 4.14e-01 86.6% 72.2%
3937390 2484.8.1.0 mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.58 50.0 3.43e-01 100.0% 72.9%
3846927 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 52.0 4.62e-01 100.0% 85.3%
2069009 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.57 39.0 3.12e-01 71.6% 59.6%
4582465 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 43.0 3.67e-01 80.6% 54.5%
3735222 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 48.0 2.95e-01 94.0% 33.3%
4023434 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.39e-01 82.1% 40.7%
3601563 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 40.0 3.25e-01 76.1% 47.9%
4819161 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 39.0 2.73e-01 73.1% 47.0%
4929818 861.1.1.0 a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.56 39.0 3.19e-01 74.6% 88.1%
3198829 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.56 42.0 3.51e-01 82.1% 45.8%
4675181 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 41.0 3.62e-01 86.6% 54.7%
3717566 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.56 43.0 2.97e-01 88.1% 52.9%
3480466 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 3.42e-01 82.1% 46.4%
3906313 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 44.0 2.79e-01 89.6% 31.7%
3965299 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.55 42.0 2.79e-01 85.1% 19.3%
3605675 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 2.80e-01 94.0% 29.2%
3272286 220.1.1.174 beta barrels › PH domain-like › PH domain-like › PH domain-like › Cybc1_Eros 0.55 41.0 3.57e-01 88.1% 50.9%
3261831 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.54 40.0 3.24e-01 79.1% 82.3%
4030715 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.54 38.0 3.17e-01 76.1% 65.4%
3579887 5.1.5.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_LRRK2 0.53 41.0 2.69e-01 82.1% 35.4%
4627488 5.1.4.156 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.53 43.0 2.70e-01 91.0% 31.5%
4507316 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.53 40.0 3.42e-01 82.1% 53.0%
4009943 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 38.0 3.18e-01 77.6% 65.6%
3259317 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.52 38.0 3.15e-01 79.1% 84.0%
3812257 2003.1.6.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like 0.52 43.0 3.18e-01 92.5% 48.3%
3723092 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.52 38.0 3.28e-01 82.1% 56.7%
3740052 220.1.1.57 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_20 0.52 39.0 3.27e-01 82.1% 46.7%
3242490 109.21.1.1 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 0.51 41.0 2.48e-01 94.0% 33.1%
4968231 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.51 38.0 2.42e-01 82.1% 38.3%
3266702 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 34.0 3.15e-01 70.1% 50.5%
3506373 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.50 37.0 3.05e-01 80.6% 63.0%
3926998 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.50 36.0 3.47e-01 77.6% 71.2%
D2 medium residues 141-194
PDB