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NC_031129.1__YP_009293541.1__BI168_gp084__00084

Bact-Vir

NC_031129.1__YP_009293541.1__BI168_gp084__00084

Identity

Accession:
NC_031129 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Punavirus› Salmonella_phage_SJ46

TaxID: 1815968

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-105
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 38.0 4.05e-01 81.7% 68.1%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.63 50.0 3.47e-01 85.6% 33.6%
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 39.0 4.35e-01 84.6% 79.8%
2oa9B02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.61 34.0 3.18e-01 78.8% 44.1%
4hlbA00 3.30.70.2960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 41.0 4.25e-01 70.2% 81.1%
2i71A01 3.40.50.10640 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like 0.58 44.0 3.46e-01 79.8% 86.1%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.57 47.0 3.32e-01 90.4% 50.0%
1atiB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 42.0 3.04e-01 78.8% 77.4%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 32.0 3.52e-01 82.7% 69.9%
1dmuA00 3.40.600.20 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Restriction endonuclease BglI 0.55 48.0 3.48e-01 96.2% 72.9%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 42.0 3.82e-01 83.7% 99.3%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 41.0 3.46e-01 79.8% 83.8%
1bcpA00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.54 42.0 3.37e-01 85.6% 70.1%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 33.0 3.57e-01 100.0% 71.9%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.53 33.0 3.84e-01 89.4% 89.0%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 35.0 3.85e-01 83.7% 85.5%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 32.0 3.98e-01 89.4% 98.5%
4eogA01 3.40.50.10640 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like 0.52 37.0 2.77e-01 76.0% 82.2%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.52 45.0 3.35e-01 97.1% 98.2%
1a8dA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 39.0 3.17e-01 82.7% 69.4%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 35.0 3.03e-01 70.2% 56.7%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 28.0 3.24e-01 73.1% 73.1%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3940986 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.70 41.0 4.72e-01 80.8% 80.0%
4002789 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 46.0 4.64e-01 82.7% 68.6%
5077254 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.57 46.0 3.03e-01 89.4% 36.9%
1687168 2492.1.1.26 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like 0.57 45.0 3.74e-01 85.6% 74.5%
3805401 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.56 45.0 3.56e-01 90.4% 84.1%
3961866 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.56 40.0 3.70e-01 79.8% 59.2%
11008 2008.1.1.61 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc_BglI 0.55 48.0 3.48e-01 96.2% 72.9%
3265915 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.55 44.0 3.12e-01 87.5% 91.8%
4930787 315.1.1.0 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF 0.53 44.0 4.39e-01 100.0% 88.2%
3710561 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 26.0 3.17e-01 81.7% 75.4%
4886283 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.51 42.0 3.32e-01 92.3% 74.0%
3712649 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.51 44.0 2.88e-01 99.0% 26.9%
3666338 219.1.1.41 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C78 0.51 42.0 3.09e-01 94.2% 67.3%
3699292 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.50 44.0 3.69e-01 99.0% 73.5%