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NC_031230.1__YP_009301249.1__BJD55_gp027__00190
Bact-VirNC_031230.1__YP_009301249.1__BJD55_gp027__00190
Identity
- Accession:
- NC_031230 ↗
- Kingdom:
- phage
Quality
89.9
mean pLDDT
Taxonomy
TaxID: 1821566
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 13-71
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dm8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 49.0 | 3.79e-01 | 84.7% | 51.9% |
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.63 | 41.0 | 4.55e-01 | 74.6% | 84.8% |
| 1przA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.63 | 52.0 | 3.66e-01 | 93.2% | 92.8% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.62 | 43.0 | 3.26e-01 | 74.6% | 88.6% |
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.62 | 40.0 | 4.16e-01 | 74.6% | 72.2% |
| 5mteA00 | 3.90.45.10 | Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase | 0.61 | 44.0 | 3.41e-01 | 78.0% | 56.2% |
| 3iwaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 48.0 | 3.49e-01 | 89.8% | 43.3% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 44.0 | 4.34e-01 | 89.8% | 76.2% |
| 3hk4A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 44.0 | 3.58e-01 | 84.7% | 56.8% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 41.0 | 4.56e-01 | 74.6% | 93.6% |
| 3loiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 39.0 | 2.88e-01 | 71.2% | 72.5% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 45.0 | 4.23e-01 | 89.8% | 87.5% |
| 4fssB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 34.0 | 3.40e-01 | 89.8% | 55.7% |
| 5xilA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.55 | 44.0 | 3.39e-01 | 86.4% | 54.7% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 39.0 | 3.92e-01 | 74.6% | 83.1% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.55 | 42.0 | 2.86e-01 | 89.8% | 22.3% |
| 1wq8A00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.54 | 40.0 | 3.42e-01 | 79.7% | 58.6% |
| 4c0dB00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.54 | 37.0 | 2.68e-01 | 78.0% | 22.5% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 40.0 | 3.23e-01 | 84.7% | 71.2% |
| 7mwzD01 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.53 | 44.0 | 3.28e-01 | 100.0% | 82.2% |
| 3goxA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 33.0 | 3.51e-01 | 76.3% | 72.5% |
| 3fgyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 45.0 | 3.56e-01 | 100.0% | 77.0% |
| 7e52A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 43.0 | 3.46e-01 | 94.9% | 71.9% |
| 4bs9A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 39.0 | 2.73e-01 | 81.4% | 65.9% |
| 2ckkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 34.0 | 3.52e-01 | 76.3% | 73.6% |
| 3uuwB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 44.0 | 3.22e-01 | 100.0% | 34.8% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.52 | 35.0 | 3.72e-01 | 72.9% | 89.6% |
| 2oqcA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.51 | 43.0 | 2.75e-01 | 96.6% | 82.0% |
| 1xmxA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 42.0 | 3.19e-01 | 96.6% | 36.9% |
| 2pvaA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.51 | 43.0 | 2.72e-01 | 96.6% | 82.2% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 38.0 | 3.63e-01 | 84.7% | 66.7% |
| 4g4sP00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.51 | 40.0 | 2.96e-01 | 94.9% | 41.1% |
| 1nnvA01 | 3.10.450.140 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative | 0.50 | 36.0 | 3.14e-01 | 79.7% | 58.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5045148 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 44.0 | 4.00e-01 | 72.9% | 47.5% |
| 3612090 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 50.0 | 5.05e-01 | 78.0% | 86.7% |
| 3694950 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.68 | 53.0 | 3.96e-01 | 84.7% | 53.1% |
| 4021728 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.65 | 52.0 | 3.05e-01 | 88.1% | 33.3% |
| 3462235 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.65 | 48.0 | 4.44e-01 | 81.4% | 72.5% |
| 3376990 | 7579.1.1.20 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LCAT | 0.65 | 48.0 | 2.83e-01 | 78.0% | 30.4% |
| 4131272 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.65 | 51.0 | 3.78e-01 | 86.4% | 63.9% |
| 3598499 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 50.0 | 3.75e-01 | 83.1% | 38.6% |
| 3189356 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.65 | 51.0 | 3.53e-01 | 89.8% | 30.7% |
| 3925803 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.62 | 46.0 | 3.73e-01 | 79.7% | 70.9% |
| 5048115 | 4294.1.1.2 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p | 0.61 | 43.0 | 3.83e-01 | 78.0% | 60.0% |
| 3948467 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.61 | 46.0 | 4.53e-01 | 83.1% | 83.1% |
| 3720552 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.60 | 46.0 | 3.11e-01 | 84.7% | 88.3% |
| 135165 | 243.1.1.36 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_5 | 0.58 | 44.0 | 3.59e-01 | 84.7% | 57.3% |
| 3213693 | 243.1.1.75 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 | 0.57 | 41.0 | 3.28e-01 | 79.7% | 85.2% |
| 3941717 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 41.0 | 3.72e-01 | 79.7% | 78.4% |
| 5018717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 40.0 | 4.12e-01 | 74.6% | 98.2% |
| 3882452 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.56 | 47.0 | 3.46e-01 | 100.0% | 80.0% |
| 3988064 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 38.0 | 3.66e-01 | 72.9% | 65.7% |
| 5028505 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.55 | 41.0 | 3.18e-01 | 86.4% | 34.3% |
| 3954203 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.55 | 44.0 | 4.11e-01 | 89.8% | 86.7% |
| 3598854 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 40.0 | 3.10e-01 | 86.4% | 33.6% |
| 4933284 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.55 | 38.0 | 2.93e-01 | 74.6% | 35.4% |
| 3670792 | 243.3.1.67 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C | 0.54 | 41.0 | 4.00e-01 | 81.4% | 90.8% |
| 4952318 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 39.0 | 3.89e-01 | 83.1% | 98.5% |
| 4024016 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 37.0 | 2.90e-01 | 72.9% | 34.4% |
| 4929844 | 2.1.1.135 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 | 0.54 | 37.0 | 3.32e-01 | 74.6% | 48.9% |
| 3609894 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.53 | 44.0 | 3.30e-01 | 100.0% | 43.9% |
| 1030945 | 2008.1.1.34 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc | 0.53 | 45.0 | 3.50e-01 | 100.0% | 42.2% |
| 3408588 | 4.1.1.243 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa | 0.53 | 38.0 | 3.57e-01 | 72.9% | 62.9% |
| 3211848 | 5.1.4.453 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_KLHDC2_KLHL20_DRC7 | 0.53 | 35.0 | 2.21e-01 | 78.0% | 10.6% |
| 3412668 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 42.0 | 3.44e-01 | 91.5% | 75.8% |
| 3264469 | 4.1.1.309 ↗ | beta barrels › SH3 › SH3 › SH3 › MRP-S34 | 0.52 | 41.0 | 3.79e-01 | 94.9% | 89.4% |
| 5065631 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.52 | 40.0 | 3.91e-01 | 84.7% | 98.5% |
| 4823230 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.52 | 36.0 | 3.29e-01 | 72.9% | 53.1% |
| 4414202 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 44.0 | 3.37e-01 | 100.0% | 91.6% |
| 5027812 | 375.1.1.5 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L44 | 0.52 | 40.0 | 3.49e-01 | 84.7% | 89.2% |
| 3785552 | 330.3.1.1 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 | 0.52 | 35.0 | 2.78e-01 | 72.9% | 30.7% |
| 3486078 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 37.0 | 2.34e-01 | 81.4% | 18.7% |
| 3596561 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.50 | 36.0 | 3.50e-01 | 79.7% | 91.4% |
D2
medium
residues 72-134
Domain cluster:
rep: KJ410134.1__AHJ86699.1__CRB1_88__00087__D57-117